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Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS08210 and LRK54_RS08215 are separated by 32 nucleotides
LRK54_RS08215 and LRK54_RS08220 overlap by 4 nucleotides
LRK54_RS08220 and LRK54_RS08225 are separated by 191 nucleotides
LRK54_RS08225 and LRK54_RS08230 overlap by 4 nucleotides
LRK54_RS08210: LRK54_RS08210 - hypothetical protein, at 1,795,983 to 1,796,846
_RS08210
LRK54_RS08215: LRK54_RS08215 - cupin domain-containing protein, at 1,796,879 to 1,797,259
_RS08215
LRK54_RS08220: LRK54_RS08220 - hypothetical protein, at 1,797,256 to 1,797,558
_RS08220
LRK54_RS08225: LRK54_RS08225 - AI-2E family transporter, at 1,797,750 to 1,798,940
_RS08225
LRK54_RS08230: LRK54_RS08230 - hypothetical protein, at 1,798,937 to 1,799,260
_RS08230
Group
Condition
LRK54
_RS08210
LRK54
_RS08215
LRK54
_RS08220
LRK54
_RS08225
LRK54
_RS08230
stress
R2A with Cobalt chloride 0.15625 mM
-0.1
-0.1
+0.3
+0.1
-1.4
phage
3E-T1
-0.1
+0.1
+0.1
-0.2
-1.1
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
-0.1
+0.1
-0.2
-0.4
-0.5
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
-0.3
-0.8
-0.0
+0.0
-0.1
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
+0.1
-0.2
-0.1
-0.7
-0.2
stress
R2A with nitrite 25 mM
+0.1
-0.0
-0.3
-0.0
-0.8
stress
R2A with Calcium chloride 250 mM
+0.1
+0.1
-0.1
-0.1
-1.1
r2a_control
R2A control
-0.0
-0.1
+0.1
-0.1
-0.8
stress
R2A with chromate 0.0048828125 mM
+0.1
-0.5
-0.2
+0.2
-0.5
stress
R2A with Calcium chloride 125 mM
+0.1
+0.0
+0.1
+0.1
-1.2
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-0.1
-0.1
+0.2
-0.2
-0.6
biofilm assay; biofilm sample
biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
+0.0
-0.4
-0.1
-0.5
+0.2
phage
1D-T2
-0.1
+0.2
-0.1
-0.4
-0.4
stress
R2A with ammonium iron(II) sulfate 2.5 mM
+0.1
+0.2
-0.1
-0.1
-0.7
stress
R2A with Manganese (II) chloride tetrahydrate 6.25 mM
+0.1
+0.2
-0.0
-1.2
+0.4
stress
R2A with Aluminum chloride 3.125 mM
+0.0
+0.2
+0.0
-1.1
+0.3
carbon source
D-Glucose (C) and 20 AA mix; 20C
-0.0
+0.0
+0.2
+0.1
-0.9
stress
R2A with lead(II) chloride 0.625 mM
-0.1
+0.3
-0.0
-0.1
-0.7
stress
R2A with Aluminum chloride 3.125 mM
+0.0
-0.0
+0.0
-0.7
+0.4
pH
R2A_PIPES pH 4
+0.1
+0.1
+0.0
-0.6
+0.4
stress
R2A_PIPES with Cadmium chloride 16 uM
-0.0
-0.3
-0.1
-0.1
+0.6
r2a_control
R2A control
+0.1
-0.1
-0.3
-0.3
+0.6
stress
R2A with Nickel (II) chloride 0.3125 mM
+0.2
+0.2
+0.2
-0.6
+0.1
stress
R2A with Cobalt chloride 0.15625 mM
-0.2
+0.4
-0.2
-0.4
+0.5
stress
R2A with Selective_ion_mix_1 1 X
+0.1
-0.0
+0.0
-0.4
+0.6
pH
R2A_PIPES pH 4
-0.0
+0.0
+0.0
-0.6
+0.9
phage
2E-T2
+0.0
+0.1
-0.1
-0.2
+0.7
carbon source
a-Cyclodextrin 20 mM
+0.1
-0.4
+0.1
-0.1
+0.9
stress
R2A with Selective_ion_mix_1 1 X
+0.1
+0.1
+0.1
-0.3
+0.6
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
-0.3
-0.3
-0.1
+0.2
+1.4
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