Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS08025 and LRK54_RS08030 are separated by 53 nucleotidesLRK54_RS08030 and LRK54_RS08035 are separated by 51 nucleotidesLRK54_RS08035 and LRK54_RS08040 are separated by 19 nucleotidesLRK54_RS08040 and LRK54_RS08045 are separated by 176 nucleotides LRK54_RS08025: LRK54_RS08025 - NAD(P)-dependent oxidoreductase, at 1,758,254 to 1,758,865 _RS08025 LRK54_RS08030: LRK54_RS08030 - DNA starvation/stationary phase protection protein, at 1,758,919 to 1,759,467 _RS08030 LRK54_RS08035: LRK54_RS08035 - NAD(P)H-dependent oxidoreductase, at 1,759,519 to 1,760,091 _RS08035 LRK54_RS08040: LRK54_RS08040 - cation transporter, at 1,760,111 to 1,760,454 _RS08040 LRK54_RS08045: LRK54_RS08045 - DoxX family protein, at 1,760,631 to 1,760,981 _RS08045
Group Condition LRK54_RS08025 LRK54_RS08030 LRK54_RS08035 LRK54_RS08040 LRK54_RS08045
stress R2A_PIPES with Nickel (II) chloride 424 uM -3.3 -0.2 -0.0 -0.2 -0.1
stress R2A_PIPES with Metal_ion_mix_sitestressplate 2 x -1.0 -0.8 -0.1 -0.8 +0.7
pH R2A pH6 -0.9 -0.1 -0.0 -0.4 -0.2
stress R2A with Nickel (II) chloride 0.3125 mM -0.8 -0.0 -0.0 -0.6 -0.1
stress R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM -1.2 +0.1 -0.0 -0.5 +0.0
biofilm assay; planktonic sample planktonic; Day2; NLDM; -1.1 -0.2 +0.0 -0.2 -0.1
phage 4B-T1 -1.1 -0.4 -0.0 -0.1 +0.2
stress R2A_PIPES with Aluminum chloride 1.125 mM -1.0 -0.3 -0.1 +0.1 +0.1
phage 1E-T1 -1.2 -0.4 -0.2 +0.5 +0.1
stress R2A with Selective_ion_mix_1 1 X -0.9 +0.1 +0.0 +0.2 -0.4
stress R2A with Selective_ion_mix_1 1 X -0.3 +0.3 +0.0 -0.4 -0.6
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -1.5 +0.2 -0.1 +0.5 -0.1
biofilm assay; planktonic sample planktonic; Day1; NLDM; -0.8 +0.0 -0.0 +0.4 -0.5
r2a_control R2A control -1.1 -0.1 +0.0 +0.3 -0.0
stress R2A with Cobalt chloride 0.15625 mM +0.3 +0.1 -0.2 +0.3 -1.2
stress R2A with chromate 0.0048828125 mM +0.3 +1.2 -0.3 +0.1 -1.7
biofilm assay; planktonic sample planktonic; Day2; NLDM; Aluminum chloride 1mM -0.4 -0.6 +0.1 +0.5 -0.0
stress R2A with Zinc chloride 0.625 mM -1.6 +0.3 +0.0 -0.1 +1.0
phage SA-T1 -0.5 +0.2 +0.0 -0.4 +0.4
biofilm assay; planktonic sample planktonic; Day1; NLDM; +0.5 -0.5 -0.0 +0.2 -0.5
phage phage 31.1 +0.6 -0.2 +0.1 +0.2 -0.5
carbon source a-Cyclodextrin 20 mM +1.5 -0.1 -0.1 -0.2 -0.2
carbon source D-Maltose 20 mM +1.4 +0.0 -0.0 -0.0 -0.2
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM +0.6 -0.2 -0.1 +0.7 +0.2
carbon source acetate 20 mM +1.8 -0.4 +0.1 -0.3 +0.1
carbon source D-Raffinose 20 mM +1.8 -0.3 +0.0 -0.0 +0.1
carbon source D-Glucose-6-Phosphate 20 mM +2.1 -0.3 +0.0 -0.2 +0.2
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +1.1 +0.0 +0.3 +0.3 +0.2
carbon source a-Cyclodextrin 20 mM +2.7 -0.1 -0.0 -0.1 -0.3
carbon source D-Glucose-6-Phosphate 20 mM +3.1 -0.1 +0.1 -0.4 +0.2
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