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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS07930 and LRK54_RS07935 are separated by 284 nucleotides
LRK54_RS07935 and LRK54_RS07940 are separated by 29 nucleotides
LRK54_RS07940 and LRK54_RS07945 overlap by 1 nucleotides
LRK54_RS07945 and LRK54_RS07950 are separated by 1020 nucleotides
LRK54_RS07930: LRK54_RS07930 - transposase, at 1,736,051 to 1,736,473
_RS07930
LRK54_RS07935: LRK54_RS07935 - dienelactone hydrolase family protein, at 1,736,758 to 1,737,420
_RS07935
LRK54_RS07940: LRK54_RS07940 - histidine kinase, at 1,737,450 to 1,738,502
_RS07940
LRK54_RS07945: LRK54_RS07945 - LytTR family DNA-binding domain-containing protein, at 1,738,502 to 1,739,206
_RS07945
LRK54_RS07950: LRK54_RS07950 - GIY-YIG nuclease family protein, at 1,740,227 to 1,740,649
_RS07950
Group
Condition
LRK54
_RS07930
LRK54
_RS07935
LRK54
_RS07940
LRK54
_RS07945
LRK54
_RS07950
stress
R2A with Calcium chloride 125 mM
-0.0
-0.1
-1.0
-0.8
-0.6
stress
R2A with Calcium chloride 125 mM
+0.2
-0.4
-0.5
-0.7
-0.6
stress
R2A with Uranyl acetate 2.5 mM
-0.3
-0.4
+0.4
+0.5
-0.7
stress
R2A with bismuth(III) chloride 0.03125 mM
+0.2
-1.0
+0.5
+0.9
-0.7
stress
R2A with Selective_ion_mix_1 1 X
+1.3
-0.2
-0.3
-0.4
-0.2
stress
R2A with silver chloride 1 mM
+0.0
-0.3
+0.7
+0.8
-0.9
stress
R2A with Nickel (II) chloride 0.3125 mM
-0.3
+0.3
+0.7
+0.4
-0.6
stress
R2A with beryllium sulfate tetrahydrate 1.953125 mM
-0.1
-0.2
+0.7
+0.8
-0.8
carbon source
D-Glucose (C) and 20 AA mix; 30C
-0.3
-0.4
+0.7
+0.8
-0.2
carbon source
D-Glucose (C); 30C
-0.3
-0.3
+0.7
+0.8
-0.3
stress
R2A with lead(II) chloride 0.625 mM
-0.3
+0.1
+0.7
+0.8
-0.6
carbon source
Gly-Glu 20 mM
-0.2
-0.4
+0.8
+1.0
-0.5
stress
R2A with Cesium chloride 3.90625 mM
+0.2
-0.2
+0.8
+0.6
-0.6
stress
R2A with Cesium chloride 3.90625 mM
+0.1
-0.4
+0.9
+0.6
-0.4
carbon source
D-Glucose 20 mM
-0.4
-0.2
+0.6
+1.1
-0.0
carbon source
acetate 20 mM
-0.4
-0.9
+1.2
+1.6
-0.0
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-0.0
+0.2
+0.6
+1.0
-0.5
stress
R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
+0.7
+0.4
+0.8
+0.8
-1.1
stress
R2A with Ferric chloride 1.5625 mM
+0.4
-0.5
+1.1
+1.1
-0.4
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
+0.0
-0.1
+0.9
+1.4
-0.5
carbon source
Gly-Glu 20 mM
-0.3
-0.1
+1.0
+1.3
-0.2
pH
R2A_PIPES pH 4
+0.2
+0.0
+0.9
+1.0
-0.3
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
+0.7
-0.3
+0.4
+0.8
+0.3
carbon source
D-Trehalose 20 mM
-0.2
+0.0
+0.9
+1.4
-0.1
carbon source
acetate 20 mM
-0.2
-0.3
+1.3
+1.6
-0.2
stress
R2A with Aluminum chloride 3.125 mM
+0.1
+0.2
+1.2
+1.2
-0.3
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
-0.0
+0.3
+0.8
+1.2
+0.3
stress
R2A with ammonium iron(II) sulfate 2.5 mM
-0.1
-0.4
+1.7
+1.6
+0.1
anaerobic
Anaerobic, acetate donor; nitrate and iron electron acceptors
-0.3
-0.1
+1.8
+2.4
-0.2
anaerobic
Anaerobic, acetate donor; nitrate and iron electron acceptors
+0.1
+0.1
+1.2
+1.8
+0.4
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LRK54_RS07940
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