Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS07780 and LRK54_RS07785 are separated by 9 nucleotidesLRK54_RS07785 and LRK54_RS07790 are separated by 140 nucleotidesLRK54_RS07790 and LRK54_RS07795 are separated by 59 nucleotidesLRK54_RS07795 and LRK54_RS07800 are separated by 168 nucleotides LRK54_RS07780: LRK54_RS07780 - efflux transporter outer membrane subunit, at 1,690,752 to 1,692,191 _RS07780 LRK54_RS07785: LRK54_RS07785 - HlyD family efflux transporter periplasmic adaptor subunit, at 1,692,201 to 1,693,394 _RS07785 LRK54_RS07790: LRK54_RS07790 - DHA2 family efflux MFS transporter permease subunit, at 1,693,535 to 1,695,061 _RS07790 LRK54_RS07795: LRK54_RS07795 - acyloxyacyl hydrolase, at 1,695,121 to 1,695,642 _RS07795 LRK54_RS07800: LRK54_RS07800 - insulinase family protein, at 1,695,811 to 1,697,283 _RS07800
Group Condition LRK54_RS07780 LRK54_RS07785 LRK54_RS07790 LRK54_RS07795 LRK54_RS07800
biofilm assay; planktonic sample planktonic; Day1; NLDM; -0.7 -0.8 -0.4 -0.4 -0.4
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM -0.5 -0.4 -0.4 -0.2 -0.4
biofilm assay; planktonic sample Planktonic; Day2; SGW; pH7 -0.5 -0.6 -0.4 +0.0 +0.1
carbon source D-Trehalose 20 mM -0.4 -0.2 -0.3 -0.2 -0.1
biofilm assay; biofilm sample biofilm; Day1; NLDM; -0.2 -0.3 -0.1 -0.4 -0.2
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM -0.4 -0.1 -0.0 -0.5 -0.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.1 -0.2 -0.2 -0.4 -0.1
biofilm assay; planktonic sample planktonic; Day2; NLDM; Aluminum chloride 1mM -0.3 -0.3 -0.2 +0.1 -0.4
r2a_control R2A control -0.3 -0.3 -0.3 -0.1 -0.0
stress R2A with Uranyl acetate 2.5 mM -0.2 -0.1 -0.1 -0.3 +0.1
stress R2A with selenate 31.25 mM -0.2 -0.1 -0.1 -0.3 +0.2
stress R2A with SpecU metal mix 1 X -0.2 -0.2 -0.3 +0.2 +0.2
pH R2A_PIPES pH 4.25 -0.1 -0.3 -0.2 +0.3 +0.2
stress R2A with chromate 0.0048828125 mM +0.2 +0.2 +0.2 -0.3 +0.0
stress R2A with Aluminum chloride 3.125 mM +0.3 +0.2 +0.2 -0.2 +0.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.3 -0.1 -0.0 +0.5 -0.0
stress R2A with Selective_ion_mix_1 1 X +0.4 +0.2 +0.1 -0.2 +0.2
pH R2A_PIPES pH 4 +0.0 +0.1 +0.3 +0.6 -0.1
stress R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM +0.1 +0.1 +0.2 +0.2 +0.3
stress R2A with Selective_ion_mix_1 1 X +0.3 +0.2 +0.2 +0.0 +0.2
stress R2A with arsenate 31.25 mM +0.2 +0.1 +0.2 +0.2 +0.2
phage S5-T2 +0.3 +0.1 -0.0 +0.3 +0.3
stress R2A with Zinc chloride 0.625 mM +0.2 +0.1 +0.2 +0.2 +0.3
stress R2A with Manganese (II) chloride tetrahydrate 6.25 mM +0.1 +0.2 +0.1 +0.2 +0.4
phage 4E-T2 +0.2 +0.1 +0.0 +0.5 +0.2
stress R2A with Zinc chloride 0.625 mM +0.1 +0.2 +0.2 +0.3 +0.3
stress R2A with m-arsenite 0.078125 mM +0.2 +0.1 +0.2 +0.3 +0.3
stress R2A with m-arsenite 0.0390625 mM +0.1 +0.2 +0.1 +0.4 +0.4
phage 1C-T1 +0.3 +0.2 +0.2 +0.3 +0.3
stress R2A with Aluminum chloride 3.125 mM +0.8 +0.8 +0.7 -0.5 +0.2
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