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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS07775 and LRK54_RS07780 are separated by 23 nucleotides
LRK54_RS07780 and LRK54_RS07785 are separated by 9 nucleotides
LRK54_RS07785 and LRK54_RS07790 are separated by 140 nucleotides
LRK54_RS07790 and LRK54_RS07795 are separated by 59 nucleotides
LRK54_RS07775: LRK54_RS07775 - MarR family transcriptional regulator, at 1,690,270 to 1,690,728
_RS07775
LRK54_RS07780: LRK54_RS07780 - efflux transporter outer membrane subunit, at 1,690,752 to 1,692,191
_RS07780
LRK54_RS07785: LRK54_RS07785 - HlyD family efflux transporter periplasmic adaptor subunit, at 1,692,201 to 1,693,394
_RS07785
LRK54_RS07790: LRK54_RS07790 - DHA2 family efflux MFS transporter permease subunit, at 1,693,535 to 1,695,061
_RS07790
LRK54_RS07795: LRK54_RS07795 - acyloxyacyl hydrolase, at 1,695,121 to 1,695,642
_RS07795
Group
Condition
LRK54
_RS07775
LRK54
_RS07780
LRK54
_RS07785
LRK54
_RS07790
LRK54
_RS07795
stress
R2A with Chloride 250 mM
-3.1
-0.1
-0.1
-0.0
-0.1
r2a_control
R2A control
-3.1
+0.1
-0.1
-0.0
-0.1
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
-3.1
-0.1
+0.0
-0.1
-0.0
biofilm assay; planktonic sample
planktonic; Day1; NLDM;
-0.9
-0.7
-0.8
-0.4
-0.4
r2a_control
R2A control
-1.9
-0.3
-0.3
-0.3
-0.1
stress
R2A with bismuth(III) chloride 0.03125 mM
-2.7
-0.2
-0.0
+0.0
+0.1
stress
R2A with Cesium chloride 3.90625 mM
-2.5
-0.1
-0.3
+0.0
+0.1
stress
R2A with mercury (II) chloride 0.009765625 mM
-2.7
-0.0
-0.1
+0.0
+0.1
stress
R2A with sodium bromide 250 mM
-2.2
-0.3
-0.1
-0.0
-0.0
stress
R2A with Nickel (II) chloride 0.3125 mM
-2.6
+0.0
-0.1
+0.0
+0.0
stress
R2A with Uranyl acetate 2.5 mM
-1.8
-0.2
-0.1
-0.1
-0.3
stress
R2A with sulfate 250 mM
-1.8
-0.3
-0.3
-0.1
-0.0
stress
R2A with Chloride 250 mM
-1.9
-0.2
-0.2
-0.1
-0.1
stress
R2A with Ferric chloride 1.5625 mM
-1.7
-0.2
-0.3
-0.1
-0.1
stress
R2A with ammonium iron(II) sulfate 2.5 mM
-2.0
-0.1
-0.1
-0.2
-0.0
stress
R2A with Magnesium sulfate 3.90625 mM
-2.0
-0.1
-0.2
-0.0
-0.0
stress
R2A with Barium chloride 1.25 mM
-2.2
+0.0
-0.1
-0.2
+0.1
stress
R2A with selenate 31.25 mM
-1.6
-0.2
-0.1
-0.1
-0.3
stress
R2A with silver chloride 1 mM
-1.8
-0.2
-0.2
+0.1
-0.2
stress
R2A with Calcium chloride 125 mM
-1.8
-0.1
-0.2
+0.0
-0.2
biofilm assay; planktonic sample
Planktonic; Day2; SGW; pH7
-0.7
-0.5
-0.6
-0.4
+0.0
stress
R2A with lithium chloride 15.625 mM
-1.8
-0.1
-0.1
+0.1
-0.2
stress
R2A with selenate 31.25 mM
-1.9
-0.1
-0.1
-0.0
+0.0
stress
R2A with Strontium chloride 3.90625 mM
-2.0
-0.2
-0.0
+0.0
+0.1
stress
R2A with beryllium sulfate tetrahydrate 1.953125 mM
-1.7
-0.2
-0.2
-0.1
+0.2
stress
R2A with Strontium chloride 3.90625 mM
-1.7
-0.1
-0.1
-0.1
+0.1
r2a_control
R2A control
-1.9
-0.0
+0.0
+0.0
+0.2
stress
R2A with m-arsenite 0.078125 mM
-2.3
+0.2
+0.1
+0.2
+0.3
stress
R2A with bismuth(III) chloride 0.03125 mM
-1.6
+0.1
+0.0
+0.3
+0.3
stress
R2A with Aluminum chloride 3.125 mM
+0.3
+0.8
+0.8
+0.7
-0.5
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LRK54_RS07785
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