Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS07620 and LRK54_RS07625 overlap by 4 nucleotidesLRK54_RS07625 and LRK54_RS07630 are separated by 424 nucleotidesLRK54_RS07630 and LRK54_RS07635 are separated by 89 nucleotidesLRK54_RS07635 and LRK54_RS07640 are separated by 32 nucleotides LRK54_RS07620: LRK54_RS07620 - efflux RND transporter periplasmic adaptor subunit, at 1,642,428 to 1,643,480 _RS07620 LRK54_RS07625: LRK54_RS07625 - TolC family protein, at 1,643,477 to 1,644,892 _RS07625 LRK54_RS07630: LRK54_RS07630 - penicillin-binding protein 1C, at 1,645,317 to 1,647,620 _RS07630 LRK54_RS07635: LRK54_RS07635 - hypothetical protein, at 1,647,710 to 1,648,261 _RS07635 LRK54_RS07640: LRK54_RS07640 - alpha-2-macroglobulin family protein, at 1,648,294 to 1,653,288 _RS07640
Group Condition LRK54_RS07620 LRK54_RS07625 LRK54_RS07630 LRK54_RS07635 LRK54_RS07640
stress R2A with SpecU metal mix 1 X -1.3 -1.8 +0.0 -0.2 +0.1
stress R2A with SpecU metal mix 1 X -1.9 -1.4 +0.1 -0.1 +0.2
stress R2A with Aluminum chloride 3.125 mM -0.8 -0.9 +0.0 -0.2 +0.0
stress R2A with bismuth(III) chloride 0.03125 mM -0.3 -0.4 -0.2 -1.0 +0.0
biofilm assay; planktonic sample Planktonic; Day2; SGW; pH7 +0.2 +0.0 -1.1 -0.7 -0.1
stress R2A_PIPES with Metal_ion_mix_sitestressplate 2 x -0.6 -0.3 -0.4 -0.3 -0.1
stress R2A with Ferric chloride 1.5625 mM -0.5 -0.2 -0.3 -0.6 +0.0
stress R2A with Nickel (II) chloride 0.3125 mM -0.5 -0.4 -0.2 -0.4 +0.1
biofilm assay; biofilm sample biofilm; Day1; NLDM; -1.0 -0.2 -0.0 -0.1 +0.0
phage phage 31.1 -0.2 -0.5 -0.2 -0.3 -0.1
stress R2A with Aluminum chloride 3.125 mM -0.3 -0.7 -0.0 -0.2 +0.1
r2a_control R2A control -0.5 -0.4 +0.0 -0.4 +0.0
stress R2A with sodium bromide 250 mM -0.4 -0.4 +0.0 -0.5 +0.2
stress R2A with bismuth(III) chloride 0.03125 mM -0.6 -0.2 +0.1 -0.5 -0.0
r2a_control R2A control -0.8 +0.1 +0.0 -0.4 +0.0
r2a_control R2A control -0.6 +0.1 +0.1 -0.6 +0.0
stress R2A with sodium bromide 250 mM -0.8 -0.0 +0.1 -0.3 +0.1
stress R2A with Magnesium sulfate 3.90625 mM -0.6 -0.1 +0.2 -0.5 +0.0
stress R2A with Cesium chloride 3.90625 mM -0.5 -0.1 +0.1 -0.5 +0.1
carbon source a-Cyclodextrin 20 mM -0.4 -0.5 -0.3 +0.4 -0.0
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.5 +0.3 -0.2 -0.3 +0.0
biofilm assay; planktonic sample planktonic; Day2; NLDM; Aluminum chloride 1mM -0.6 +0.1 -0.3 +0.3 -0.1
stress R2A with silver chloride 1 mM -0.2 -0.2 +0.2 -0.5 +0.2
stress R2A with sulfate 250 mM -0.4 -0.2 +0.3 -0.3 +0.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.6 +0.3 +0.2 +0.0 -0.1
stress R2A_PIPES with Nickel (II) chloride 424 uM -0.4 +0.3 -0.3 +0.3 +0.1
phage 2A-T1 -0.2 +0.5 +0.2 -0.2 +0.1
phage 1E-T2 -0.5 +0.3 +0.6 -0.3 +0.4
phage 1E-T1 -0.4 +0.0 +0.4 +0.0 +0.7
phage 4B-T2 -0.0 +0.3 +0.5 -0.1 +0.5
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