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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS07525 and LRK54_RS07530 overlap by 4 nucleotides
LRK54_RS07530 and LRK54_RS07535 are separated by 20 nucleotides
LRK54_RS07535 and LRK54_RS07540 overlap by 4 nucleotides
LRK54_RS07540 and LRK54_RS07545 overlap by 4 nucleotides
LRK54_RS07525: LRK54_RS07525 - FAD-dependent oxidoreductase, at 1,621,448 to 1,622,746
_RS07525
LRK54_RS07530: LRK54_RS07530 - DUF1365 domain-containing protein, at 1,622,743 to 1,623,543
_RS07530
LRK54_RS07535: LRK54_RS07535 - cyclopropane-fatty-acyl-phospholipid synthase family protein, at 1,623,564 to 1,624,859
_RS07535
LRK54_RS07540: LRK54_RS07540 - DUF2878 domain-containing protein, at 1,624,856 to 1,625,416
_RS07540
LRK54_RS07545: LRK54_RS07545 - DUF1295 domain-containing protein, at 1,625,413 to 1,626,195
_RS07545
Group
Condition
LRK54
_RS07525
LRK54
_RS07530
LRK54
_RS07535
LRK54
_RS07540
LRK54
_RS07545
stress
R2A with Nickel (II) chloride 0.3125 mM
-0.3
+0.1
-0.5
-0.8
+0.1
biofilm assay; biofilm sample
biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
+0.2
-0.2
-0.0
-1.2
+0.2
stress
R2A with Nickel (II) chloride 0.3125 mM
-0.1
+0.0
-0.3
-0.6
-0.1
pH
R2A pH7
-0.2
-0.0
+0.0
-0.6
-0.2
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
-0.1
-0.3
+0.1
-0.9
+0.2
stress
R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
+0.0
-0.0
-0.1
-0.6
-0.2
stress
R2A_PIPES with Nickel (II) chloride 424 uM
+0.0
-0.3
+0.0
-0.5
-0.1
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
+0.0
-0.2
-0.2
+0.3
-0.7
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
+0.3
-0.1
-0.0
-0.7
-0.1
carbon source
D-Glucose (C) and 20 AA mix; 20C
-0.4
-0.0
-0.3
+0.2
-0.2
stress
R2A with bismuth(III) chloride 0.03125 mM
+0.3
-0.1
-0.1
-0.4
-0.2
stress
R2A with bismuth(III) chloride 0.03125 mM
-0.0
+0.1
-0.0
-0.7
+0.1
carbon source
D-Trehalose 20 mM
-0.2
-0.1
+0.1
-0.4
+0.2
stress
R2A with lead(II) chloride 0.625 mM
-0.0
+0.1
+0.1
-0.6
+0.2
stress
R2A with Uranyl acetate 2.5 mM
+0.1
+0.0
+0.1
-0.5
+0.3
phage
phage 31.1
-0.1
+0.3
-0.3
-0.3
+0.3
stress
R2A with Cadmium chloride hemipentahydrate 0.0390625 mM
+0.0
-0.1
-0.1
+0.5
-0.3
carbon source
acetate 20 mM
-0.1
-0.0
-0.0
+0.6
-0.3
phage
1E-T1
-0.2
-0.1
+0.2
+0.6
-0.3
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
+0.3
+0.1
+0.2
-0.2
-0.3
biofilm assay; biofilm sample
biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
+0.3
+0.3
-0.1
-0.3
+0.0
phage
4B-T2
-0.0
-0.2
+0.1
+0.5
+0.1
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
+0.3
-0.1
-0.0
+0.5
+0.0
phage
1B-T1
+0.1
-0.1
+0.1
+0.6
+0.0
phage
S3-T2
+0.0
-0.1
+0.3
+0.5
+0.3
phage
1C-T1
+0.2
+0.1
+0.2
+0.6
+0.1
carbon source
a-Cyclodextrin 20 mM
+0.4
+0.1
-0.0
+0.8
-0.0
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
+0.2
+0.1
+0.1
+0.7
+0.1
carbon source
a-Cyclodextrin 20 mM
+0.5
+0.1
+0.1
+0.9
-0.2
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Aluminum chloride 1mM
+0.4
-0.0
+0.3
+0.8
+0.3
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