Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS07525 and LRK54_RS07530 overlap by 4 nucleotidesLRK54_RS07530 and LRK54_RS07535 are separated by 20 nucleotidesLRK54_RS07535 and LRK54_RS07540 overlap by 4 nucleotidesLRK54_RS07540 and LRK54_RS07545 overlap by 4 nucleotides LRK54_RS07525: LRK54_RS07525 - FAD-dependent oxidoreductase, at 1,621,448 to 1,622,746 _RS07525 LRK54_RS07530: LRK54_RS07530 - DUF1365 domain-containing protein, at 1,622,743 to 1,623,543 _RS07530 LRK54_RS07535: LRK54_RS07535 - cyclopropane-fatty-acyl-phospholipid synthase family protein, at 1,623,564 to 1,624,859 _RS07535 LRK54_RS07540: LRK54_RS07540 - DUF2878 domain-containing protein, at 1,624,856 to 1,625,416 _RS07540 LRK54_RS07545: LRK54_RS07545 - DUF1295 domain-containing protein, at 1,625,413 to 1,626,195 _RS07545
Group Condition LRK54_RS07525 LRK54_RS07530 LRK54_RS07535 LRK54_RS07540 LRK54_RS07545
stress R2A with Nickel (II) chloride 0.3125 mM -0.3 +0.1 -0.5 -0.8 +0.1
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM +0.2 -0.2 -0.0 -1.2 +0.2
stress R2A with Nickel (II) chloride 0.3125 mM -0.1 +0.0 -0.3 -0.6 -0.1
pH R2A pH7 -0.2 -0.0 +0.0 -0.6 -0.2
biofilm assay; planktonic sample Planktonic; Day4; SGW; pH7 -0.1 -0.3 +0.1 -0.9 +0.2
stress R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM +0.0 -0.0 -0.1 -0.6 -0.2
stress R2A_PIPES with Nickel (II) chloride 424 uM +0.0 -0.3 +0.0 -0.5 -0.1
stress R2A_PIPES with Metal_ion_mix_sitestressplate 2 x +0.0 -0.2 -0.2 +0.3 -0.7
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.3 -0.1 -0.0 -0.7 -0.1
carbon source D-Glucose (C) and 20 AA mix; 20C -0.4 -0.0 -0.3 +0.2 -0.2
stress R2A with bismuth(III) chloride 0.03125 mM +0.3 -0.1 -0.1 -0.4 -0.2
stress R2A with bismuth(III) chloride 0.03125 mM -0.0 +0.1 -0.0 -0.7 +0.1
carbon source D-Trehalose 20 mM -0.2 -0.1 +0.1 -0.4 +0.2
stress R2A with lead(II) chloride 0.625 mM -0.0 +0.1 +0.1 -0.6 +0.2
stress R2A with Uranyl acetate 2.5 mM +0.1 +0.0 +0.1 -0.5 +0.3
phage phage 31.1 -0.1 +0.3 -0.3 -0.3 +0.3
stress R2A with Cadmium chloride hemipentahydrate 0.0390625 mM +0.0 -0.1 -0.1 +0.5 -0.3
carbon source acetate 20 mM -0.1 -0.0 -0.0 +0.6 -0.3
phage 1E-T1 -0.2 -0.1 +0.2 +0.6 -0.3
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM +0.3 +0.1 +0.2 -0.2 -0.3
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM +0.3 +0.3 -0.1 -0.3 +0.0
phage 4B-T2 -0.0 -0.2 +0.1 +0.5 +0.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.3 -0.1 -0.0 +0.5 +0.0
phage 1B-T1 +0.1 -0.1 +0.1 +0.6 +0.0
phage S3-T2 +0.0 -0.1 +0.3 +0.5 +0.3
phage 1C-T1 +0.2 +0.1 +0.2 +0.6 +0.1
carbon source a-Cyclodextrin 20 mM +0.4 +0.1 -0.0 +0.8 -0.0
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM +0.2 +0.1 +0.1 +0.7 +0.1
carbon source a-Cyclodextrin 20 mM +0.5 +0.1 +0.1 +0.9 -0.2
biofilm assay; planktonic sample planktonic; Day2; NLDM; Aluminum chloride 1mM +0.4 -0.0 +0.3 +0.8 +0.3
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