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Protein
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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS07425 and LRK54_RS07430 are separated by 49 nucleotides
LRK54_RS07430 and LRK54_RS07435 are separated by 17 nucleotides
LRK54_RS07435 and LRK54_RS07440 are separated by 772 nucleotides
LRK54_RS07440 and LRK54_RS07445 are separated by 559 nucleotides
LRK54_RS07425: LRK54_RS07425 - CoA transferase, at 1,601,053 to 1,602,252
_RS07425
LRK54_RS07430: LRK54_RS07430 - nuclear transport factor 2 family protein, at 1,602,302 to 1,602,694
_RS07430
LRK54_RS07435: LRK54_RS07435 - aspartate/glutamate racemase family protein, at 1,602,712 to 1,603,458
_RS07435
LRK54_RS07440: LRK54_RS07440 - hypothetical protein, at 1,604,231 to 1,604,668
_RS07440
LRK54_RS07445: LRK54_RS07445 - hypothetical protein, at 1,605,228 to 1,605,635
_RS07445
Group
Condition
LRK54
_RS07425
LRK54
_RS07430
LRK54
_RS07435
LRK54
_RS07440
LRK54
_RS07445
stress
R2A with bismuth(III) chloride 0.03125 mM
-0.8
-1.3
-0.5
-0.4
-0.7
stress
R2A with Nickel (II) chloride 0.3125 mM
-0.7
-1.1
-1.3
-0.4
+0.2
phage
1C-T2
-0.3
-2.3
-0.7
+0.1
+0.2
carbon source
a-Cyclodextrin 20 mM
-0.1
-1.6
-0.2
+0.0
-0.6
stress
R2A with Nickel (II) chloride 0.3125 mM
-1.0
-0.8
-0.5
-0.1
+0.1
stress
R2A with chromate 0.0048828125 mM
+0.3
-1.7
+0.0
-0.7
-0.2
stress
R2A with Other_metal_mix 1 X
-0.5
-0.7
-0.6
-0.1
-0.3
stress
R2A with Cadmium chloride hemipentahydrate 0.0390625 mM
-0.4
-0.6
-0.6
-0.2
-0.3
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
-0.5
-1.0
-0.3
-0.1
-0.3
stress
R2A with m-arsenite 0.078125 mM
-0.5
-0.8
-0.3
-0.3
-0.2
r2a_control
R2A control
-0.5
-1.0
-0.3
-0.2
-0.1
stress
R2A with Nickel (II) chloride 0.15625 mM
-0.4
-0.5
-0.5
-0.2
-0.4
r2a_control
R2A control
-0.5
-0.8
-0.7
-0.1
-0.1
r2a_control
R2A control
-0.5
-0.7
-0.5
-0.2
-0.2
stress
R2A with nitrate 125 mM
-0.4
-0.9
-0.6
-0.1
+0.0
r2a_control
R2A control
-0.6
-0.8
-0.3
-0.1
-0.2
stress
R2A with nitrite 50 mM
-0.4
-0.8
-0.3
+0.1
-0.4
carbon source
Gly-Glu 20 mM
-0.4
-0.8
-0.4
-0.1
-0.3
stress
R2A with m-arsenite 0.0390625 mM
-0.6
-0.6
-0.5
-0.2
-0.1
biofilm assay; biofilm sample
biofilm; Day2; NLDM;
-0.1
-1.8
+0.0
+0.1
-0.2
phage
phage 31.1
-0.6
+0.3
-1.0
-0.3
-0.3
stress
R2A with chromate 0.0048828125 mM
-0.2
-1.4
-0.2
+0.3
-0.3
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-0.2
+0.3
-1.6
-0.0
-0.1
stress
R2A with Calcium chloride 125 mM
-0.5
-0.7
-0.5
+0.1
+0.2
biofilm assay; planktonic sample
Planktonic; Day2; SGW; pH7
-0.1
-1.0
-0.7
+0.3
+0.2
stress
R2A with Cesium chloride 3.90625 mM
-0.6
-0.6
-0.5
+0.2
+0.3
stress
R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
+0.4
-1.3
-0.2
+0.3
-0.3
phage
2E-T1
-0.7
-0.3
-0.4
+0.2
+0.3
carbon source
D-Glucose-6-Phosphate 20 mM
+0.2
-1.1
+0.3
+0.0
-0.4
carbon source
acetate 20 mM
-0.1
-0.9
+0.6
-0.2
+0.1
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