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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS07405 and LRK54_RS07410 are separated by 27 nucleotides
LRK54_RS07410 and LRK54_RS07415 overlap by 4 nucleotides
LRK54_RS07415 and LRK54_RS07420 overlap by 4 nucleotides
LRK54_RS07420 and LRK54_RS07425 are separated by 1 nucleotides
LRK54_RS07405: LRK54_RS07405 - LysR family transcriptional regulator, at 1,595,069 to 1,596,751
_RS07405
LRK54_RS07410: LRK54_RS07410 - efflux RND transporter permease subunit, at 1,596,779 to 1,599,148
_RS07410
LRK54_RS07415: LRK54_RS07415 - YCF48-related protein, at 1,599,145 to 1,600,128
_RS07415
LRK54_RS07420: LRK54_RS07420 - hydroxymethylglutaryl-CoA lyase, at 1,600,125 to 1,601,051
_RS07420
LRK54_RS07425: LRK54_RS07425 - CoA transferase, at 1,601,053 to 1,602,252
_RS07425
Group
Condition
LRK54
_RS07405
LRK54
_RS07410
LRK54
_RS07415
LRK54
_RS07420
LRK54
_RS07425
stress
R2A with Nickel (II) chloride 0.3125 mM
-0.4
-0.8
-1.2
-0.1
-0.7
stress
R2A with bismuth(III) chloride 0.03125 mM
-0.3
-1.0
-0.0
-0.4
-0.8
r2a_control
R2A control
-0.4
-0.7
-0.5
-0.3
-0.6
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
+0.1
-0.7
-0.8
-0.5
-0.3
r2a_control
R2A control
-0.4
-0.6
-0.6
-0.2
-0.5
r2a_control
R2A control
-0.4
-0.5
-0.5
-0.3
-0.6
r2a_control
R2A control
-0.3
-0.5
-0.3
-0.3
-0.7
stress
R2A with Chloride 250 mM
-0.3
-0.6
-0.8
-0.0
-0.5
stress
R2A with silver chloride 1 mM
-0.3
-0.5
-0.3
-0.1
-0.8
r2a_control
R2A control
-0.3
-0.5
-0.5
-0.2
-0.5
r2a_control
R2A control
-0.3
-0.6
-0.5
-0.3
-0.5
stress
R2A with Nickel (II) chloride 0.3125 mM
-0.2
-0.3
-0.4
-0.2
-1.0
r2a_control
R2A control
-0.3
-0.5
-0.5
-0.3
-0.5
r2a_control
R2A control
-0.3
-0.5
-0.2
-0.3
-0.6
r2a_control
R2A control
-0.4
-0.5
-0.4
-0.3
-0.5
r2a_control
R2A control
-0.3
-0.4
-0.4
-0.2
-0.7
stress
R2A with bismuth(III) chloride 0.03125 mM
-0.2
-0.4
-0.4
-0.2
-0.7
stress
R2A with Calcium chloride 250 mM
-0.2
-0.3
-0.6
-0.2
-0.6
r2a_control
R2A control
-0.2
-0.4
-0.3
-0.2
-0.8
stress
R2A with ammonium iron(II) sulfate 2.5 mM
-0.2
-0.2
-0.7
-0.1
-0.6
r2a_control
R2A control
-0.4
-0.4
-0.3
-0.3
-0.5
r2a_control
R2A control
-0.3
-0.4
-0.3
-0.2
-0.6
stress
R2A with Magnesium sulfate 3.90625 mM
-0.2
-0.2
-0.6
-0.1
-0.6
stress
R2A with nitrite 50 mM
-0.3
-0.4
-0.5
-0.1
-0.5
r2a_control
R2A control
-0.3
-0.5
-0.2
-0.3
-0.5
r2a_control
R2A control
-0.3
-0.3
-0.5
-0.2
-0.4
r2a_control
R2A control
-0.2
-0.5
-0.2
-0.3
-0.5
stress
R2A with Chloride 250 mM
-0.3
-0.3
-0.6
+0.0
-0.5
r2a_control
R2A control
-0.2
-0.2
-0.7
+0.1
-0.5
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-0.3
+0.2
-0.6
+0.3
-0.4
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