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Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS07395 and LRK54_RS07400 are separated by 58 nucleotides
LRK54_RS07400 and LRK54_RS07405 are separated by 14 nucleotides
LRK54_RS07405 and LRK54_RS07410 are separated by 27 nucleotides
LRK54_RS07410 and LRK54_RS07415 overlap by 4 nucleotides
LRK54_RS07395: LRK54_RS07395 - hydantoinase/oxoprolinase family protein, at 1,591,670 to 1,593,745
_RS07395
LRK54_RS07400: LRK54_RS07400 - DUF1329 domain-containing protein, at 1,593,804 to 1,595,054
_RS07400
LRK54_RS07405: LRK54_RS07405 - LysR family transcriptional regulator, at 1,595,069 to 1,596,751
_RS07405
LRK54_RS07410: LRK54_RS07410 - efflux RND transporter permease subunit, at 1,596,779 to 1,599,148
_RS07410
LRK54_RS07415: LRK54_RS07415 - YCF48-related protein, at 1,599,145 to 1,600,128
_RS07415
Group
Condition
LRK54
_RS07395
LRK54
_RS07400
LRK54
_RS07405
LRK54
_RS07410
LRK54
_RS07415
stress
R2A with Nickel (II) chloride 0.3125 mM
-0.3
-0.5
-0.4
-0.8
-1.2
r2a_control
R2A control
-0.1
-0.6
-0.4
-0.7
-0.5
r2a_control
R2A control
-0.1
-0.5
-0.4
-0.5
-0.5
r2a_control
R2A control
-0.1
-0.5
-0.3
-0.6
-0.5
stress
R2A with bismuth(III) chloride 0.03125 mM
-0.4
-0.2
-0.3
-1.0
-0.0
stress
R2A with Chloride 250 mM
-0.0
-0.2
-0.3
-0.6
-0.8
r2a_control
R2A control
-0.1
-0.5
-0.3
-0.5
-0.5
r2a_control
R2A control
-0.1
-0.3
-0.4
-0.6
-0.6
r2a_control
R2A control
-0.1
-0.5
-0.4
-0.5
-0.4
r2a_control
R2A control
-0.1
-0.5
-0.3
-0.5
-0.5
r2a_control
R2A control
-0.1
-0.6
-0.3
-0.5
-0.3
stress
R2A with nitrite 50 mM
-0.0
-0.6
-0.3
-0.4
-0.5
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
+0.0
-0.3
+0.1
-0.7
-0.8
r2a_control
R2A control
-0.1
-0.5
-0.4
-0.4
-0.3
r2a_control
R2A control
-0.1
-0.6
-0.3
-0.5
-0.2
r2a_control
R2A control
-0.1
-0.5
-0.3
-0.4
-0.4
r2a_control
R2A control
-0.1
-0.4
-0.3
-0.5
-0.2
stress
R2A with Magnesium sulfate 3.90625 mM
-0.1
-0.4
-0.2
-0.2
-0.6
stress
R2A with Nickel (II) chloride 0.3125 mM
-0.0
-0.6
-0.2
-0.3
-0.4
stress
R2A with Chloride 250 mM
-0.0
-0.3
-0.3
-0.4
-0.6
stress
R2A with silver chloride 1 mM
-0.1
-0.3
-0.3
-0.5
-0.3
r2a_control
R2A control
-0.1
-0.5
-0.3
-0.4
-0.3
stress
R2A with Calcium chloride 250 mM
-0.0
-0.4
-0.2
-0.3
-0.6
stress
R2A with Cadmium chloride hemipentahydrate 0.0390625 mM
-0.1
-0.2
-0.3
-0.3
-0.5
pH
R2A pH5
-0.2
-0.3
-0.3
-0.3
-0.3
stress
R2A with bismuth(III) chloride 0.03125 mM
+0.0
-0.4
-0.2
-0.4
-0.4
r2a_control
R2A control
-0.1
-0.3
-0.3
-0.3
-0.5
stress
R2A with Chloride 250 mM
+0.1
-0.3
-0.3
-0.3
-0.6
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-0.1
-0.3
-0.3
+0.2
-0.6
stress
R2A with Chloride 250 mM
+0.2
-0.3
-0.3
-0.3
-0.4
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