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Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS07155 and LRK54_RS07160 are separated by 21 nucleotides
LRK54_RS07160 and LRK54_RS07165 are separated by 283 nucleotides
LRK54_RS07165 and LRK54_RS07170 are separated by 109 nucleotides
LRK54_RS07170 and LRK54_RS07175 are separated by 106 nucleotides
LRK54_RS07155: LRK54_RS07155 - ankyrin repeat domain-containing protein, at 1,533,280 to 1,536,720
_RS07155
LRK54_RS07160: LRK54_RS07160 - monovalent cation:proton antiporter-2 (CPA2) family protein, at 1,536,742 to 1,538,577
_RS07160
LRK54_RS07165: LRK54_RS07165 - DUF4325 domain-containing protein, at 1,538,861 to 1,539,919
_RS07165
LRK54_RS07170: LRK54_RS07170 - peptidyl-dipeptidase Dcp, at 1,540,029 to 1,542,203
_RS07170
LRK54_RS07175: LRK54_RS07175 - hypothetical protein, at 1,542,310 to 1,542,657
_RS07175
Group
Condition
LRK54
_RS07155
LRK54
_RS07160
LRK54
_RS07165
LRK54
_RS07170
LRK54
_RS07175
stress
R2A with bismuth(III) chloride 0.03125 mM
-2.8
-0.5
+0.1
+0.0
-0.0
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-0.6
-1.8
+0.1
+0.1
+0.0
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Aluminum chloride 1mM
-0.4
-1.0
-0.1
-0.2
-0.1
stress
R2A with SpecU metal mix 1 X
-2.0
-0.0
+0.1
+0.1
+0.3
stress
R2A with nitrite 25 mM
-1.5
-0.2
+0.0
+0.0
+0.0
stress
R2A with Ferric chloride 1.5625 mM
-1.6
+0.0
+0.1
+0.1
+0.2
biofilm assay; planktonic sample
planktonic; Day1; NLDM;
+0.3
-0.4
-0.3
-0.4
-0.4
stress
R2A with Aluminum chloride 1.5625 mM
-1.2
-0.2
+0.2
+0.2
+0.1
stress
R2A with Aluminum chloride 3.125 mM
-1.2
-0.6
+0.2
+0.5
+0.1
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-1.1
-0.2
-0.2
+0.3
+0.3
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.6
-0.4
-0.3
-0.4
-0.4
stress
R2A with SpecU metal mix 1 X
-1.9
+0.3
+0.2
+0.3
+0.3
stress
R2A with ammonium iron(II) sulfate 2.5 mM
-1.1
+0.4
-0.1
+0.1
-0.1
stress
R2A with Aluminum chloride 3.125 mM
-1.0
-0.3
+0.2
+0.4
+0.0
phage
2A-T2
+0.3
-1.1
+0.1
+0.0
+0.2
stress
R2A with Manganese (II) chloride tetrahydrate 6.25 mM
-1.0
+0.2
+0.2
+0.4
-0.0
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
-0.8
-0.5
+0.3
+0.3
+0.7
stress
R2A with Cesium chloride 3.90625 mM
+0.6
-0.6
+0.1
+0.3
-0.2
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-0.8
+0.6
+0.1
+0.1
+0.2
stress
R2A with lithium chloride 15.625 mM
+1.0
-0.6
+0.1
+0.3
+0.0
carbon source
Gly-Glu 20 mM
+1.4
-0.4
-0.0
+0.2
-0.1
carbon source
Gly-Glu 20 mM
+1.2
-0.2
-0.0
+0.2
+0.1
phage
1A-T2
+1.3
-0.3
+0.1
+0.1
+0.2
phage
1E-T2
+1.5
-0.1
+0.1
-0.0
+0.0
stress
R2A with Manganese (II) chloride tetrahydrate 2.5 mM
+1.3
-0.2
+0.2
+0.3
+0.0
phage
1E-T1
+1.9
+0.0
-0.2
+0.0
+0.0
phage
1D-T2
+1.7
-0.1
+0.1
-0.0
+0.2
phage
4B-T2
+1.8
-0.0
+0.1
+0.0
+0.2
carbon source
a-Cyclodextrin 20 mM
+2.2
+1.0
-0.1
+0.1
-0.3
carbon source
a-Cyclodextrin 20 mM
+2.3
+1.1
-0.0
+0.0
-0.2
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