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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS07070 and LRK54_RS07075 are separated by 21 nucleotides
LRK54_RS07075 and LRK54_RS07080 are separated by 156 nucleotides
LRK54_RS07080 and LRK54_RS07085 are separated by 294 nucleotides
LRK54_RS07085 and LRK54_RS07090 are separated by 1 nucleotides
LRK54_RS07070: LRK54_RS07070 - hypothetical protein, at 1,513,858 to 1,514,514
_RS07070
LRK54_RS07075: LRK54_RS07075 - magnesium-translocating P-type ATPase, at 1,514,536 to 1,517,190
_RS07075
LRK54_RS07080: LRK54_RS07080 - hypothetical protein, at 1,517,347 to 1,517,589
_RS07080
LRK54_RS07085: LRK54_RS07085 - heme o synthase, at 1,517,884 to 1,518,786
_RS07085
LRK54_RS07090: LRK54_RS07090 - COX15/CtaA family protein, at 1,518,788 to 1,519,963
_RS07090
Group
Condition
LRK54
_RS07070
LRK54
_RS07075
LRK54
_RS07080
LRK54
_RS07085
LRK54
_RS07090
stress
R2A with SpecU metal mix 1 X
+0.0
-3.0
-0.7
-1.3
-1.3
stress
R2A with m-arsenite 0.078125 mM
+0.3
-0.9
-0.0
-3.1
-2.4
stress
R2A with m-arsenite 0.078125 mM
+0.2
-1.1
+0.4
-3.0
-2.5
stress
R2A with SpecU metal mix 1 X
-0.0
-3.1
-0.6
-1.2
-1.2
anaerobic
Anaerobic, acetate donor; nitrate and iron electron acceptors
+0.1
-1.7
+0.0
-1.5
-1.4
pH
R2A_PIPES pH 4.25
-0.1
-3.0
-0.4
-0.4
-0.3
carbon source
Gly-Glu 20 mM
-0.1
-2.3
-0.2
-1.0
-0.5
stress
R2A with nitrate 250 mM
-0.1
-0.7
+0.0
-2.0
-1.3
stress
R2A with nitrite 50 mM
+0.1
-1.2
+0.0
-1.7
-1.3
pH
R2A_PIPES pH 4.25
+0.2
-3.1
-0.3
-0.3
-0.4
stress
R2A with Ferric chloride 1.5625 mM
+0.0
-2.9
-0.2
-0.4
-0.4
stress
R2A with nitrite 50 mM
+0.2
-0.9
+0.1
-1.9
-1.3
pH
R2A pH5
+0.0
-2.0
+0.1
-1.0
-0.8
carbon source
Gly-Glu 20 mM
+0.1
-2.2
+0.2
-1.0
-0.6
stress
R2A with m-arsenite 0.0390625 mM
+0.2
-0.7
+0.1
-1.9
-1.3
stress
R2A with m-arsenite 0.0390625 mM
+0.2
-0.6
+0.0
-1.8
-1.4
stress
R2A with nitrate 250 mM
+0.2
-0.6
+0.1
-2.1
-1.2
pH
R2A pH5
+0.2
-2.0
+0.1
-0.9
-0.9
stress
R2A with Calcium chloride 250 mM
+0.2
-2.6
-0.0
-0.3
-0.8
pH
R2A pH5
+0.1
-1.8
+0.1
-1.1
-0.7
pH
R2A_PIPES pH 4
-0.1
-3.4
+0.2
-0.1
+0.2
stress
R2A with nitrite 25 mM
+0.2
-1.0
+0.1
-1.5
-1.0
stress
R2A with Aluminum chloride 3.125 mM
-1.1
+0.5
+0.4
-0.8
-1.2
stress
R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM
+0.2
+0.9
+0.6
-1.2
-0.9
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
+0.4
+1.3
+0.9
-1.5
-1.3
stress
R2A with Nickel (II) chloride 0.3125 mM
+0.3
+1.6
-0.3
-1.0
-0.8
stress
R2A with Nickel (II) chloride 0.3125 mM
+0.5
+2.5
+0.6
-1.5
-1.6
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
+0.4
+1.6
+1.1
-1.4
-0.9
stress
R2A_PIPES with Cobalt chloride 256 uM
+0.5
+1.9
+1.8
-0.9
-0.6
stress
R2A_PIPES with Cobalt chloride 256 uM
+0.5
+2.3
+2.1
-0.9
-0.7
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