Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS07015 and LRK54_RS07020 overlap by 4 nucleotidesLRK54_RS07020 and LRK54_RS07025 are separated by 94 nucleotidesLRK54_RS07025 and LRK54_RS07030 are separated by 114 nucleotidesLRK54_RS07030 and LRK54_RS07035 are separated by 67 nucleotides LRK54_RS07015: LRK54_RS07015 - ABC transporter ATP-binding protein, at 1,504,962 to 1,505,927 _RS07015 LRK54_RS07020: LRK54_RS07020 - ABC transporter permease, at 1,505,924 to 1,506,706 _RS07020 LRK54_RS07025: LRK54_RS07025 - pseudouridine synthase, at 1,506,801 to 1,507,520 _RS07025 LRK54_RS07030: LRK54_RS07030 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 1,507,635 to 1,508,684 _RS07030 LRK54_RS07035: LRK54_RS07035 - 30S ribosomal protein S21, at 1,508,752 to 1,508,967 _RS07035
Group Condition LRK54_RS07015 LRK54_RS07020 LRK54_RS07025 LRK54_RS07030 LRK54_RS07035
stress R2A with arsenate 15.625 mM N.D. -2.9 -0.3 N.D. N.D.
biofilm assay; biofilm sample biofilm; Day1; NLDM; N.D. -3.1 +0.1 N.D. N.D.
stress R2A with arsenate 15.625 mM N.D. -2.9 +0.0 N.D. N.D.
stress R2A with nitrate 125 mM N.D. -2.9 +0.0 N.D. N.D.
stress R2A with nitrate 125 mM N.D. -2.8 -0.0 N.D. N.D.
stress R2A with Nickel (II) chloride 0.3125 mM N.D. -2.7 -0.1 N.D. N.D.
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM N.D. -2.4 -0.4 N.D. N.D.
r2a_control R2A control N.D. -2.7 -0.1 N.D. N.D.
r2a_control R2A control N.D. -2.6 -0.1 N.D. N.D.
stress R2A with Nickel (II) chloride 0.3125 mM N.D. -2.5 -0.2 N.D. N.D.
r2a_control R2A control N.D. -2.6 -0.0 N.D. N.D.
stress R2A with Nickel (II) chloride 0.625 mM N.D. -2.4 -0.2 N.D. N.D.
r2a_control R2A control N.D. -2.7 +0.2 N.D. N.D.
stress R2A with nitrite 50 mM N.D. -2.4 -0.1 N.D. N.D.
pH R2A pH7 N.D. -2.5 +0.0 N.D. N.D.
pH R2A_PIPES pH 4 N.D. -2.5 +0.1 N.D. N.D.
r2a_control R2A control N.D. -2.3 -0.1 N.D. N.D.
biofilm assay; planktonic sample planktonic; Day1; NLDM; N.D. -2.2 -0.2 N.D. N.D.
stress R2A with arsenate 31.25 mM N.D. -2.4 +0.0 N.D. N.D.
stress R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM N.D. -2.4 +0.0 N.D. N.D.
stress R2A with Cobalt chloride 0.078125 mM N.D. -2.2 -0.1 N.D. N.D.
pH R2A pH7 N.D. -2.4 +0.1 N.D. N.D.
no stress control no stress control N.D. -2.4 +0.1 N.D. N.D.
r2a_control R2A control N.D. -2.3 +0.1 N.D. N.D.
stress R2A with Other_metal_mix 1 X N.D. -2.3 +0.1 N.D. N.D.
pH R2A pH6 N.D. -2.3 +0.1 N.D. N.D.
no stress control no stress control N.D. -2.0 +0.2 N.D. N.D.
stress R2A with Nickel (II) chloride 0.3125 mM N.D. -1.9 +0.5 N.D. N.D.
carbon source Gly-Glu 20 mM N.D. +2.4 -0.1 N.D. N.D.
stress R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM N.D. +2.6 -0.2 N.D. N.D.
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