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Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS06960 and LRK54_RS06965 overlap by 4 nucleotides
LRK54_RS06965 and LRK54_RS06970 are separated by 2 nucleotides
LRK54_RS06970 and LRK54_RS06975 overlap by 8 nucleotides
LRK54_RS06975 and LRK54_RS06980 are separated by 32 nucleotides
LRK54_RS06960: LRK54_RS06960 - hypothetical protein, at 1,495,351 to 1,495,524
_RS06960
LRK54_RS06965: LRK54_RS06965 - alpha/beta hydrolase, at 1,495,521 to 1,497,101
_RS06965
LRK54_RS06970: LRK54_RS06970 - helix-turn-helix transcriptional regulator, at 1,497,104 to 1,497,304
_RS06970
LRK54_RS06975: LRK54_RS06975 - hypothetical protein, at 1,497,297 to 1,497,509
_RS06975
LRK54_RS06980: LRK54_RS06980 - hypothetical protein, at 1,497,542 to 1,498,162
_RS06980
Group
Condition
LRK54
_RS06960
LRK54
_RS06965
LRK54
_RS06970
LRK54
_RS06975
LRK54
_RS06980
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
-1.0
-0.3
-0.7
-0.5
-0.1
stress
R2A with Nickel (II) chloride 0.3125 mM
-0.8
-0.9
-0.4
-0.6
+0.1
anaerobic
Anaerobic, acetate donor; nitrate and iron electron acceptors
+0.1
-0.6
-1.6
-0.3
-0.1
stress
R2A with Cesium chloride 3.90625 mM
-0.6
-0.8
-0.3
-0.4
-0.3
stress
R2A with sodium bromide 250 mM
+0.0
-0.1
-1.3
-0.8
-0.1
stress
R2A with sodium bromide 250 mM
+0.5
-0.2
-1.3
-0.8
-0.4
stress
R2A with bismuth(III) chloride 0.03125 mM
+0.3
-1.2
-0.6
-0.6
-0.2
stress
R2A with Nickel (II) chloride 0.3125 mM
-1.6
-0.2
-0.5
+0.0
+0.2
r2a_control
R2A control
-0.9
-0.1
-0.5
-0.1
-0.3
stress
R2A with Chloride 250 mM
+0.2
-0.3
-1.2
-0.8
+0.0
stress
R2A with Chloride 250 mM
+0.4
-0.1
-1.3
-0.9
-0.1
phage
3E-T2
-1.0
-0.0
-0.7
+0.0
-0.3
stress
R2A with m-arsenite 0.078125 mM
-0.4
-0.8
-0.2
-0.3
-0.2
stress
R2A with Magnesium sulfate 3.90625 mM
+0.1
-0.7
-0.6
-0.6
-0.0
phage
2E-T1
-0.5
-0.1
-0.9
-0.1
-0.1
stress
R2A with Cesium chloride 3.90625 mM
+0.1
-0.7
-0.4
-0.6
-0.0
phage
2F-T1
+0.2
-0.3
-0.7
-0.3
-0.3
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
-1.1
-0.4
+0.2
-0.1
-0.1
stress
R2A with silver chloride 1 mM
-0.5
-0.8
+0.2
-0.2
-0.1
stress
R2A with Chloride 250 mM
+0.2
-0.2
-0.4
-0.9
-0.1
stress
R2A with selenate 31.25 mM
+0.3
-0.5
-0.4
-0.5
-0.2
stress
R2A with lithium chloride 15.625 mM
+0.8
-0.5
-0.9
-0.6
-0.0
phage
1C-T2
+0.2
-0.2
-0.9
-0.5
+0.2
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-0.6
+0.2
-0.3
-0.6
+0.2
carbon source
D-Glucose-6-Phosphate 20 mM
-1.3
+0.1
-0.2
-0.1
+0.4
phage
1E-T1
-0.7
+0.1
-0.4
+0.3
-0.3
biofilm assay; biofilm sample
biofilm; Day2; NLDM;
+0.7
+0.0
-0.8
-0.1
-0.1
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
+1.2
+0.2
-0.8
-0.5
-0.2
stress
R2A with Manganese (II) chloride tetrahydrate 6.25 mM
-0.2
-0.4
+0.8
+0.6
-0.3
stress
R2A with chromate 0.0048828125 mM
-0.9
-0.1
+1.6
+0.4
-0.3
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