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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS06885 and LRK54_RS06890 are separated by 72 nucleotides
LRK54_RS06890 and LRK54_RS06895 are separated by 54 nucleotides
LRK54_RS06895 and LRK54_RS06900 overlap by 4 nucleotides
LRK54_RS06900 and LRK54_RS06905 are separated by 87 nucleotides
LRK54_RS06885: LRK54_RS06885 - rhodanese-like domain-containing protein, at 1,481,926 to 1,482,372
_RS06885
LRK54_RS06890: LRK54_RS06890 - 2Fe-2S iron-sulfur cluster-binding protein, at 1,482,445 to 1,483,512
_RS06890
LRK54_RS06895: LRK54_RS06895 - hotdog fold thioesterase, at 1,483,567 to 1,484,007
_RS06895
LRK54_RS06900: LRK54_RS06900 - serine/threonine protein kinase, at 1,484,004 to 1,484,948
_RS06900
LRK54_RS06905: LRK54_RS06905 - DUF1190 domain-containing protein, at 1,485,036 to 1,485,566
_RS06905
Group
Condition
LRK54
_RS06885
LRK54
_RS06890
LRK54
_RS06895
LRK54
_RS06900
LRK54
_RS06905
stress
R2A with bismuth(III) chloride 0.03125 mM
-2.6
+0.0
-2.0
-0.3
-2.3
stress
R2A with Cesium chloride 3.90625 mM
-3.4
+0.1
-0.9
+0.1
-2.0
stress
R2A with Magnesium sulfate 3.90625 mM
-3.7
+0.0
-0.0
+0.0
-2.1
stress
R2A with silver chloride 1 mM
-3.5
-0.0
-0.3
-0.2
-1.6
r2a_control
R2A control
-3.6
+0.1
-1.1
-0.1
-0.8
stress
R2A with lead(II) chloride 0.625 mM
-3.7
+0.0
-0.7
-0.0
-1.1
r2a_control
R2A control
-3.4
+0.1
-0.9
-0.1
-1.0
r2a_control
R2A control
-3.6
+0.0
-1.0
+0.1
-0.8
stress
R2A with Cesium chloride 3.90625 mM
-3.2
+0.2
-0.4
+0.1
-1.8
r2a_control
R2A control
-3.5
+0.1
-0.7
+0.1
-1.1
r2a_control
R2A control
-3.8
+0.1
-0.7
-0.0
-0.6
stress
R2A with Nickel (II) chloride 0.3125 mM
-3.1
+0.1
-1.9
+0.1
-0.1
pH
R2A pH5
-2.9
+0.0
-1.9
+0.1
-0.3
stress
R2A with Manganese (II) chloride tetrahydrate 0.15625 mM
-4.4
-0.0
+0.2
+0.1
-0.7
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
-3.6
-0.2
-0.9
+0.2
-0.2
stress
R2A with mercury (II) chloride 0.009765625 mM
-3.7
+0.0
+0.1
+0.0
-1.2
stress
R2A with Magnesium sulfate 3.90625 mM
-3.6
+0.0
+1.0
+0.1
-2.1
r2a_control
R2A control
-4.0
+0.0
+0.3
+0.2
-0.9
stress
R2A with sodium bromide 250 mM
-3.8
+0.0
+0.3
+0.1
-1.1
stress
R2A with lithium chloride 15.625 mM
-3.2
-0.1
+0.7
+0.0
-1.8
stress
R2A with Chloride 250 mM
-3.6
+0.1
+0.6
-0.1
-1.3
stress
R2A with Chloride 250 mM
-3.5
-0.1
+0.7
+0.1
-1.6
r2a_control
R2A control
-4.0
+0.0
+0.6
-0.0
-0.8
r2a_control
R2A control
-4.0
+0.0
+0.4
+0.1
-0.7
stress
R2A with Ferric chloride 1.5625 mM
-3.5
-0.1
+0.7
-0.0
-1.2
r2a_control
R2A control
-3.8
-0.0
+0.7
-0.0
-0.9
stress
R2A with Nickel (II) chloride 0.3125 mM
-3.8
-0.0
+1.1
+0.3
-1.5
stress
R2A with Chloride 250 mM
-3.5
-0.1
+1.1
+0.0
-1.4
stress
R2A with silver chloride 1 mM
-3.3
-0.0
+0.8
-0.3
-1.0
stress
R2A with sulfate 250 mM
-3.6
-0.0
+1.0
+0.1
-0.7
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