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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS06805 and LRK54_RS06810 are separated by 82 nucleotides
LRK54_RS06810 and LRK54_RS06815 are separated by 107 nucleotides
LRK54_RS06815 and LRK54_RS06820 are separated by 162 nucleotides
LRK54_RS06820 and LRK54_RS06825 are separated by 67 nucleotides
LRK54_RS06805: LRK54_RS06805 - acetyl-CoA carboxylase biotin carboxylase subunit, at 1,463,831 to 1,465,198
_RS06805
LRK54_RS06810: LRK54_RS06810 - 50S ribosomal protein L11 methyltransferase, at 1,465,281 to 1,466,180
_RS06810
LRK54_RS06815: LRK54_RS06815 - zinc-ribbon and DUF3426 domain-containing protein, at 1,466,288 to 1,467,145
_RS06815
LRK54_RS06820: LRK54_RS06820 - Fis family transcriptional regulator, at 1,467,308 to 1,467,625
_RS06820
LRK54_RS06825: LRK54_RS06825 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 1,467,693 to 1,469,303
_RS06825
Group
Condition
LRK54
_RS06805
LRK54
_RS06810
LRK54
_RS06815
LRK54
_RS06820
LRK54
_RS06825
stress
R2A with Barium chloride 1.25 mM
N.D.
-1.2
-0.5
-3.4
N.D.
stress
R2A with bismuth(III) chloride 0.03125 mM
N.D.
-1.5
-1.2
-2.5
N.D.
stress
R2A with Cesium chloride 3.90625 mM
N.D.
-1.5
+0.0
-3.2
N.D.
stress
R2A with Calcium chloride 250 mM
N.D.
-1.1
-0.1
-3.3
N.D.
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
N.D.
-0.6
-0.1
-3.7
N.D.
stress
R2A with sodium bromide 250 mM
N.D.
-0.9
-0.7
-2.7
N.D.
stress
R2A with Magnesium sulfate 3.90625 mM
N.D.
-1.6
-0.6
-2.1
N.D.
r2a_control
R2A control
N.D.
-0.9
-0.3
-3.1
N.D.
stress
R2A with Chloride 250 mM
N.D.
-1.2
-0.4
-2.6
N.D.
stress
R2A with Calcium chloride 125 mM
N.D.
-0.7
+0.0
-3.5
N.D.
stress
R2A with sulfate 250 mM
N.D.
-1.1
-0.1
-2.9
N.D.
stress
R2A with Magnesium sulfate 3.90625 mM
N.D.
-1.5
-0.3
-2.2
N.D.
r2a_control
R2A control
N.D.
-1.1
-0.4
-2.5
N.D.
stress
R2A with ammonium iron(II) sulfate 2.5 mM
N.D.
-1.4
-0.3
-2.3
N.D.
stress
R2A with lead(II) chloride 0.625 mM
N.D.
-0.8
-0.2
-2.9
N.D.
stress
R2A with Nickel (II) chloride 0.3125 mM
N.D.
-1.4
+0.0
-2.6
N.D.
stress
R2A with nitrite 50 mM
N.D.
-1.1
-0.3
-2.4
N.D.
stress
R2A with lithium chloride 15.625 mM
N.D.
-1.4
-0.1
-2.5
N.D.
stress
R2A with Strontium chloride 3.90625 mM
N.D.
-1.0
+0.0
-2.9
N.D.
r2a_control
R2A control
N.D.
-0.9
-0.0
-3.0
N.D.
stress
R2A with Ferric chloride 1.5625 mM
N.D.
-1.1
-0.2
-2.4
N.D.
stress
R2A with Cesium chloride 3.90625 mM
N.D.
-1.3
-0.2
-2.1
N.D.
r2a_control
R2A control
N.D.
-1.0
+0.1
-2.7
N.D.
stress
R2A with Barium chloride 1.25 mM
N.D.
-1.2
-0.3
-2.1
N.D.
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Aluminum chloride 1mM
N.D.
-0.5
+0.1
-3.2
N.D.
stress
R2A with m-arsenite 0.078125 mM
N.D.
-1.4
+0.1
-2.2
N.D.
r2a_control
R2A control
N.D.
-1.0
-0.2
-2.3
N.D.
stress
R2A with nitrite 25 mM
N.D.
-1.2
-0.2
-2.2
N.D.
stress
R2A with silver chloride 1 mM
N.D.
-1.6
+0.2
-2.0
N.D.
stress
R2A with bismuth(III) chloride 0.03125 mM
N.D.
-1.1
-0.0
-2.2
N.D.
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