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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS06730 and LRK54_RS06735 are separated by 68 nucleotides
LRK54_RS06735 and LRK54_RS06740 are separated by 36 nucleotides
LRK54_RS06740 and LRK54_RS06745 are separated by 134 nucleotides
LRK54_RS06745 and LRK54_RS06750 are separated by 80 nucleotides
LRK54_RS06730: LRK54_RS06730 - YIP1 family protein, at 1,446,839 to 1,448,104
_RS06730
LRK54_RS06735: LRK54_RS06735 - YceI family protein, at 1,448,173 to 1,448,766
_RS06735
LRK54_RS06740: LRK54_RS06740 - malonic semialdehyde reductase, at 1,448,803 to 1,449,396
_RS06740
LRK54_RS06745: LRK54_RS06745 - mitochondrial fission ELM1 family protein, at 1,449,531 to 1,450,520
_RS06745
LRK54_RS06750: LRK54_RS06750 - bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase, at 1,450,601 to 1,453,444
_RS06750
Group
Condition
LRK54
_RS06730
LRK54
_RS06735
LRK54
_RS06740
LRK54
_RS06745
LRK54
_RS06750
pH
R2A_PIPES pH 4
-0.1
-0.3
-0.7
-2.3
-0.3
pH
R2A_PIPES pH 4
+0.1
-0.1
-1.0
-1.9
-0.3
biofilm assay; planktonic sample
planktonic; Day1; NLDM;
+0.0
+0.0
-0.2
-2.5
+0.0
stress
R2A_PIPES with Cobalt chloride 256 uM
-0.0
-0.2
-0.5
-1.2
-0.3
biofilm assay; biofilm sample
biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
-0.1
-0.1
-0.6
-1.2
-0.2
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Aluminum chloride 1mM
-0.2
-0.1
+0.0
-1.9
+0.1
stress
R2A with bismuth(III) chloride 0.03125 mM
-0.2
+0.4
-0.9
-2.0
+0.8
carbon source
NAG 20 mM
+0.1
+0.1
-0.5
-1.5
-0.0
carbon source
D-Glucose-6-Phosphate 20 mM
+0.1
+0.0
-1.2
-0.5
-0.3
biofilm assay; planktonic sample
planktonic; Day1; NLDM;
-0.0
+0.1
+0.0
-1.9
+0.0
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
-0.0
-0.1
+0.2
-1.7
-0.0
carbon source
D-Raffinose 20 mM
+0.1
-0.1
-0.8
-1.0
+0.2
carbon source
NAG 20 mM
+0.1
+0.1
-0.4
-1.4
+0.2
biofilm assay; planktonic sample
planktonic; Day1; NLDM;
+0.0
+0.1
+0.1
-1.8
+0.1
carbon source
a-Cyclodextrin 20 mM
-0.1
+0.1
-0.3
-1.7
+0.5
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
+0.1
-0.1
-1.8
+0.5
-0.0
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
+0.1
-0.0
+0.3
-2.0
+0.3
stress
R2A with silver chloride 1 mM
+0.1
+0.0
-0.6
-1.3
+0.7
stress
R2A with Cesium chloride 3.90625 mM
-0.1
+0.1
-0.9
-0.9
+1.0
stress
R2A with lithium chloride 15.625 mM
-0.1
+0.0
-0.4
-1.0
+0.6
stress
R2A with lithium chloride 15.625 mM
-0.1
+0.2
-0.4
-1.0
+0.6
stress
R2A with Nickel (II) chloride 0.3125 mM
+0.1
-0.2
-0.8
+0.6
+0.6
stress
R2A with Nickel (II) chloride 0.3125 mM
+0.0
+0.5
-0.6
-0.5
+1.3
stress
R2A with Magnesium sulfate 3.90625 mM
-0.1
+0.1
-0.4
+0.7
+0.6
stress
R2A with Magnesium sulfate 3.90625 mM
+0.0
+0.1
-0.6
+0.8
+0.7
stress
R2A with Calcium chloride 125 mM
-0.0
+0.2
-0.4
+1.3
+0.6
stress
R2A with Calcium chloride 250 mM
-0.1
+0.1
-0.3
+1.7
+0.5
stress
R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
+0.0
+0.2
-0.0
+1.4
+0.6
stress
R2A with Cobalt chloride 0.15625 mM
+0.1
+0.4
+1.5
+1.5
-0.0
stress
R2A with Cobalt chloride 0.15625 mM
+0.2
+0.3
+1.5
+1.7
-0.2
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