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Cofit
Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS06545 and LRK54_RS06550 are separated by 203 nucleotides
LRK54_RS06550 and LRK54_RS06555 are separated by 1 nucleotides
LRK54_RS06555 and LRK54_RS06560 are separated by 221 nucleotides
LRK54_RS06560 and LRK54_RS06565 are separated by 475 nucleotides
LRK54_RS06545: LRK54_RS06545 - 23S ribosomal RNA, at 1,406,974 to 1,409,853
_RS06545
LRK54_RS06550: LRK54_RS06550 - tRNA-Ala, at 1,410,057 to 1,410,132
_RS06550
LRK54_RS06555: LRK54_RS06555 - tRNA-Ile, at 1,410,134 to 1,410,210
_RS06555
LRK54_RS06560: LRK54_RS06560 - 16S ribosomal RNA, at 1,410,432 to 1,411,976
_RS06560
LRK54_RS06565: LRK54_RS06565 - DUF192 domain-containing protein, at 1,412,452 to 1,412,883
_RS06565
Group
Condition
LRK54
_RS06545
LRK54
_RS06550
LRK54
_RS06555
LRK54
_RS06560
LRK54
_RS06565
phage
3E-T1
N.D.
N.D.
N.D.
N.D.
-0.6
phage
3B-T1
N.D.
N.D.
N.D.
N.D.
-0.5
phage
2B-T2
N.D.
N.D.
N.D.
N.D.
-0.5
phage
4E-T1
N.D.
N.D.
N.D.
N.D.
-0.5
phage
1B-T1
N.D.
N.D.
N.D.
N.D.
-0.5
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
N.D.
N.D.
N.D.
N.D.
-0.4
phage
S3-T1
N.D.
N.D.
N.D.
N.D.
-0.4
phage
S3-T2
N.D.
N.D.
N.D.
N.D.
-0.4
phage
2A-T1
N.D.
N.D.
N.D.
N.D.
-0.4
phage
1C-T1
N.D.
N.D.
N.D.
N.D.
-0.4
phage
2E-T1
N.D.
N.D.
N.D.
N.D.
-0.4
phage
2F-T2
N.D.
N.D.
N.D.
N.D.
-0.4
stress
R2A with Cobalt chloride 0.15625 mM
N.D.
N.D.
N.D.
N.D.
-0.4
phage
3C-T2
N.D.
N.D.
N.D.
N.D.
-0.4
phage
4E-T2
N.D.
N.D.
N.D.
N.D.
-0.3
phage
2F-T1
N.D.
N.D.
N.D.
N.D.
-0.3
stress
R2A with Cadmium chloride hemipentahydrate 0.0390625 mM
N.D.
N.D.
N.D.
N.D.
-0.3
phage
S5-T2
N.D.
N.D.
N.D.
N.D.
-0.3
phage
SA-T2
N.D.
N.D.
N.D.
N.D.
-0.3
stress
R2A with Ferric chloride 1.5625 mM
N.D.
N.D.
N.D.
N.D.
-0.3
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
N.D.
N.D.
N.D.
N.D.
-0.3
phage
3E-T2
N.D.
N.D.
N.D.
N.D.
-0.3
r2a_control
R2A control
N.D.
N.D.
N.D.
N.D.
-0.3
stress
R2A with Selective_ion_mix_1 1 X
N.D.
N.D.
N.D.
N.D.
-0.3
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Aluminum chloride 1mM
N.D.
N.D.
N.D.
N.D.
-0.3
stress
R2A with SpecU metal mix 1 X
N.D.
N.D.
N.D.
N.D.
-0.3
phage
S5-T1
N.D.
N.D.
N.D.
N.D.
-0.3
stress
R2A_PIPES with Cadmium chloride 16 uM
N.D.
N.D.
N.D.
N.D.
+0.3
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
N.D.
N.D.
N.D.
N.D.
+0.3
biofilm assay; planktonic sample
Planktonic; Day2; SGW; pH7
N.D.
N.D.
N.D.
N.D.
+0.3
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