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Cofit
Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS06535 and LRK54_RS06540 are separated by 238 nucleotides
LRK54_RS06540 and LRK54_RS06545 are separated by 250 nucleotides
LRK54_RS06545 and LRK54_RS06550 are separated by 203 nucleotides
LRK54_RS06550 and LRK54_RS06555 are separated by 1 nucleotides
LRK54_RS06535: LRK54_RS06535 - glycerol kinase GlpK, at 1,404,872 to 1,406,371
_RS06535
LRK54_RS06540: LRK54_RS06540 - 5S ribosomal RNA, at 1,406,610 to 1,406,723
_RS06540
LRK54_RS06545: LRK54_RS06545 - 23S ribosomal RNA, at 1,406,974 to 1,409,853
_RS06545
LRK54_RS06550: LRK54_RS06550 - tRNA-Ala, at 1,410,057 to 1,410,132
_RS06550
LRK54_RS06555: LRK54_RS06555 - tRNA-Ile, at 1,410,134 to 1,410,210
_RS06555
Group
Condition
LRK54
_RS06535
LRK54
_RS06540
LRK54
_RS06545
LRK54
_RS06550
LRK54
_RS06555
anaerobic
Anaerobic, acetate donor; nitrate and iron electron acceptors
-0.6
N.D.
N.D.
N.D.
N.D.
phage
2B-T1
-0.6
N.D.
N.D.
N.D.
N.D.
phage
1C-T1
-0.5
N.D.
N.D.
N.D.
N.D.
phage
3B-T1
-0.5
N.D.
N.D.
N.D.
N.D.
stress
R2A with Strontium chloride 3.90625 mM
-0.5
N.D.
N.D.
N.D.
N.D.
phage
2F-T2
-0.5
N.D.
N.D.
N.D.
N.D.
phage
S3-T1
-0.5
N.D.
N.D.
N.D.
N.D.
phage
2A-T1
-0.5
N.D.
N.D.
N.D.
N.D.
stress
R2A with ammonium iron(II) sulfate 2.5 mM
-0.5
N.D.
N.D.
N.D.
N.D.
phage
S3-T2
-0.5
N.D.
N.D.
N.D.
N.D.
r2a_control
R2A control
-0.5
N.D.
N.D.
N.D.
N.D.
stress
R2A with lithium chloride 15.625 mM
-0.5
N.D.
N.D.
N.D.
N.D.
phage
3E-T2
-0.5
N.D.
N.D.
N.D.
N.D.
phage
4E-T2
-0.5
N.D.
N.D.
N.D.
N.D.
stress
R2A with Barium chloride 1.25 mM
-0.5
N.D.
N.D.
N.D.
N.D.
r2a_control
R2A control
-0.5
N.D.
N.D.
N.D.
N.D.
stress
R2A with Strontium chloride 3.90625 mM
-0.5
N.D.
N.D.
N.D.
N.D.
stress
R2A with Cesium chloride 3.90625 mM
-0.5
N.D.
N.D.
N.D.
N.D.
stress
R2A with lithium chloride 15.625 mM
-0.5
N.D.
N.D.
N.D.
N.D.
carbon source
acetate 20 mM
-0.5
N.D.
N.D.
N.D.
N.D.
stress
R2A with Magnesium sulfate 3.90625 mM
-0.5
N.D.
N.D.
N.D.
N.D.
phage
2A-T2
-0.4
N.D.
N.D.
N.D.
N.D.
phage
4E-T1
-0.4
N.D.
N.D.
N.D.
N.D.
stress
R2A with sodium bromide 250 mM
-0.4
N.D.
N.D.
N.D.
N.D.
stress
R2A with beryllium sulfate tetrahydrate 1.953125 mM
-0.4
N.D.
N.D.
N.D.
N.D.
stress
R2A with silver chloride 1 mM
-0.4
N.D.
N.D.
N.D.
N.D.
phage
3C-T2
-0.4
N.D.
N.D.
N.D.
N.D.
phage
S5-T2
-0.4
N.D.
N.D.
N.D.
N.D.
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
+0.6
N.D.
N.D.
N.D.
N.D.
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
+0.6
N.D.
N.D.
N.D.
N.D.
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