Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS06370 and LRK54_RS06375 are separated by 50 nucleotidesLRK54_RS06375 and LRK54_RS06380 overlap by 1 nucleotidesLRK54_RS06380 and LRK54_RS06385 overlap by 16 nucleotidesLRK54_RS06385 and LRK54_RS06390 are separated by 10 nucleotides LRK54_RS06370: LRK54_RS06370 - benenodin family lasso peptide, at 1,360,779 to 1,360,925 _RS06370 LRK54_RS06375: LRK54_RS06375 - lasso peptide biosynthesis B2 protein, at 1,360,976 to 1,361,662 _RS06375 LRK54_RS06380: LRK54_RS06380 - asparagine synthase-related protein, at 1,361,662 to 1,363,410 _RS06380 LRK54_RS06385: LRK54_RS06385 - Atxe2 family lasso peptide isopeptidase, at 1,363,395 to 1,365,575 _RS06385 LRK54_RS06390: LRK54_RS06390 - TonB-dependent receptor, at 1,365,586 to 1,368,222 _RS06390
Group Condition LRK54_RS06370 LRK54_RS06375 LRK54_RS06380 LRK54_RS06385 LRK54_RS06390
phage 2F-T2 -2.0 -0.4 -0.3 -0.2 -0.2
stress R2A_PIPES with Nickel (II) chloride 424 uM -1.1 -1.5 -0.1 +0.0 +0.0
phage 1C-T1 -0.5 -1.1 -0.5 -0.3 -0.3
phage 1C-T2 -1.9 -0.0 -0.0 -0.1 -0.2
phage 2B-T1 -1.2 -0.5 -0.3 -0.0 -0.1
biofilm assay; biofilm sample biofilm; Day1; NLDM; -1.2 -0.6 -0.1 -0.1 -0.1
pH R2A_PIPES pH 4.25 -1.6 -0.4 -0.1 +0.1 +0.0
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM -1.6 -0.0 -0.5 +0.0 +0.1
stress R2A with Nickel (II) chloride 0.3125 mM -1.0 -0.2 -0.2 -0.3 -0.1
phage 4E-T2 -0.8 -0.5 -0.2 -0.2 -0.1
stress R2A with bismuth(III) chloride 0.03125 mM -0.7 -0.5 -0.3 -0.3 -0.1
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors -0.0 -1.3 -0.3 -0.0 -0.0
r2a_control R2A control -0.5 -0.6 -0.2 -0.2 -0.1
phage 2A-T2 -0.8 -0.3 -0.3 +0.0 -0.2
r2a_control R2A control -0.5 -0.4 -0.3 -0.2 -0.1
stress R2A with Selective_ion_mix_1 1 X -1.0 -0.3 -0.0 -0.2 -0.1
r2a_control R2A control -0.8 -0.2 -0.1 -0.2 -0.2
phage 3B-T1 -1.3 +0.1 +0.0 -0.2 -0.1
phage S5-T2 -0.8 -0.1 -0.3 -0.1 -0.2
stress R2A with bismuth(III) chloride 0.03125 mM -0.6 -0.4 -0.2 -0.2 -0.1
r2a_control R2A control -0.2 -0.5 -0.3 -0.3 -0.1
r2a_control R2A control -0.2 -0.6 -0.3 -0.2 -0.2
stress R2A with Calcium chloride 125 mM -0.3 -0.3 -0.5 -0.1 -0.2
phage 1A-T2 -1.1 +0.0 -0.0 -0.1 -0.2
stress R2A with nitrate 250 mM -0.9 +0.0 -0.2 -0.2 -0.1
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.6 -0.5 -0.1 +0.1 -0.0
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.9 -0.7 +0.0 +0.3 +0.2
phage 2B-T2 -0.5 -0.7 -0.0 +0.1 +0.1
stress R2A with silver chloride 1 mM +0.4 -0.7 -0.3 -0.3 +0.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.6 -0.3 -0.4 -0.0 +0.1
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