Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS06310 and LRK54_RS06315 are separated by 52 nucleotidesLRK54_RS06315 and LRK54_RS06320 are separated by 340 nucleotidesLRK54_RS06320 and LRK54_RS06325 are separated by 101 nucleotidesLRK54_RS06325 and LRK54_RS06330 are separated by 194 nucleotides LRK54_RS06310: LRK54_RS06310 - M14 family metallocarboxypeptidase, at 1,348,814 to 1,349,740 _RS06310 LRK54_RS06315: LRK54_RS06315 - glycosyl hydrolase, at 1,349,793 to 1,351,370 _RS06315 LRK54_RS06320: LRK54_RS06320 - thiopurine S-methyltransferase, at 1,351,711 to 1,352,367 _RS06320 LRK54_RS06325: LRK54_RS06325 - DUF3016 domain-containing protein, at 1,352,469 to 1,352,984 _RS06325 LRK54_RS06330: LRK54_RS06330 - OmpH family outer membrane protein, at 1,353,179 to 1,353,787 _RS06330
Group Condition LRK54_RS06310 LRK54_RS06315 LRK54_RS06320 LRK54_RS06325 LRK54_RS06330
stress R2A with bismuth(III) chloride 0.03125 mM -0.4 +0.4 +0.5 -0.3 -2.3
stress R2A with Nickel (II) chloride 0.3125 mM -1.6 +0.0 +0.0 +0.2 -0.8
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.2 +0.0 -0.2 +0.4 -2.4
phage 1A-T1 -0.0 -0.0 -0.2 -0.5 -1.2
stress R2A with chromate 0.0048828125 mM +0.1 -0.1 -0.7 -0.2 -0.8
phage 1E-T2 -0.4 +0.0 -0.1 -0.3 -0.8
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM +0.2 -0.0 -0.3 -0.3 -1.0
stress R2A with chromate 0.0048828125 mM -0.2 +0.0 -0.0 -0.3 -0.9
phage phage 31.1 -0.1 -0.0 +0.2 -0.1 -1.0
stress R2A with Nickel (II) chloride 0.3125 mM -0.7 +0.0 +0.3 -0.2 -0.2
stress R2A with Zinc chloride 0.625 mM +0.0 +0.0 +0.2 +0.1 -1.0
stress R2A_PIPES with Metal_ion_mix_sitestressplate 2 x -0.1 -0.0 -1.1 +0.3 +0.4
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.2 +0.1 +0.1 +0.2 -0.7
phage 4E-T1 -0.3 -0.1 -0.2 -0.4 +0.5
stress R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM -0.4 +0.2 -0.6 +0.2 +0.7
stress R2A with Magnesium sulfate 3.90625 mM -0.7 +0.2 -0.1 +0.1 +0.6
stress R2A with Aluminum chloride 3.125 mM -0.0 +0.8 -0.4 -0.2 -0.1
biofilm assay; planktonic sample Planktonic; Day4; SGW; pH7 -0.1 +0.1 -0.5 +0.0 +0.7
stress R2A with Calcium chloride 125 mM -0.5 +0.2 -0.2 +0.0 +0.7
r2a_control R2A control -0.5 +0.0 +0.0 +0.0 +0.8
r2a_control R2A control -0.3 +0.1 -0.2 +0.1 +0.7
stress R2A with Ferric chloride 1.5625 mM -0.6 +0.2 +0.1 +0.1 +0.6
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM +0.1 +0.3 +0.4 +0.1 -0.5
carbon source a-Cyclodextrin 20 mM -0.4 +0.1 +0.3 +0.1 +0.5
biofilm assay; biofilm sample biofilm; Day2; NLDM; -0.3 +0.4 +0.1 -0.1 +0.5
r2a_control R2A control -0.3 +0.1 +0.2 +0.2 +0.5
biofilm assay; planktonic sample planktonic; Day1; NLDM; -0.3 -0.0 +0.4 +0.2 +0.5
phage 1C-T2 -0.3 +0.2 +0.1 -0.1 +1.0
stress R2A with Selective_ion_mix_1 1 X -0.1 +0.0 +0.1 -0.2 +1.2
stress R2A with Selective_ion_mix_1 1 X +0.0 -0.0 +0.0 -0.0 +1.4
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