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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS06310 and LRK54_RS06315 are separated by 52 nucleotides
LRK54_RS06315 and LRK54_RS06320 are separated by 340 nucleotides
LRK54_RS06320 and LRK54_RS06325 are separated by 101 nucleotides
LRK54_RS06325 and LRK54_RS06330 are separated by 194 nucleotides
LRK54_RS06310: LRK54_RS06310 - M14 family metallocarboxypeptidase, at 1,348,814 to 1,349,740
_RS06310
LRK54_RS06315: LRK54_RS06315 - glycosyl hydrolase, at 1,349,793 to 1,351,370
_RS06315
LRK54_RS06320: LRK54_RS06320 - thiopurine S-methyltransferase, at 1,351,711 to 1,352,367
_RS06320
LRK54_RS06325: LRK54_RS06325 - DUF3016 domain-containing protein, at 1,352,469 to 1,352,984
_RS06325
LRK54_RS06330: LRK54_RS06330 - OmpH family outer membrane protein, at 1,353,179 to 1,353,787
_RS06330
Group
Condition
LRK54
_RS06310
LRK54
_RS06315
LRK54
_RS06320
LRK54
_RS06325
LRK54
_RS06330
stress
R2A with bismuth(III) chloride 0.03125 mM
-0.4
+0.4
+0.5
-0.3
-2.3
stress
R2A with Nickel (II) chloride 0.3125 mM
-1.6
+0.0
+0.0
+0.2
-0.8
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
+0.2
+0.0
-0.2
+0.4
-2.4
phage
1A-T1
-0.0
-0.0
-0.2
-0.5
-1.2
stress
R2A with chromate 0.0048828125 mM
+0.1
-0.1
-0.7
-0.2
-0.8
phage
1E-T2
-0.4
+0.0
-0.1
-0.3
-0.8
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.2
-0.0
-0.3
-0.3
-1.0
stress
R2A with chromate 0.0048828125 mM
-0.2
+0.0
-0.0
-0.3
-0.9
phage
phage 31.1
-0.1
-0.0
+0.2
-0.1
-1.0
stress
R2A with Nickel (II) chloride 0.3125 mM
-0.7
+0.0
+0.3
-0.2
-0.2
stress
R2A with Zinc chloride 0.625 mM
+0.0
+0.0
+0.2
+0.1
-1.0
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
-0.1
-0.0
-1.1
+0.3
+0.4
biofilm assay; biofilm sample
biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
-0.2
+0.1
+0.1
+0.2
-0.7
phage
4E-T1
-0.3
-0.1
-0.2
-0.4
+0.5
stress
R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
-0.4
+0.2
-0.6
+0.2
+0.7
stress
R2A with Magnesium sulfate 3.90625 mM
-0.7
+0.2
-0.1
+0.1
+0.6
stress
R2A with Aluminum chloride 3.125 mM
-0.0
+0.8
-0.4
-0.2
-0.1
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
-0.1
+0.1
-0.5
+0.0
+0.7
stress
R2A with Calcium chloride 125 mM
-0.5
+0.2
-0.2
+0.0
+0.7
r2a_control
R2A control
-0.5
+0.0
+0.0
+0.0
+0.8
r2a_control
R2A control
-0.3
+0.1
-0.2
+0.1
+0.7
stress
R2A with Ferric chloride 1.5625 mM
-0.6
+0.2
+0.1
+0.1
+0.6
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
+0.1
+0.3
+0.4
+0.1
-0.5
carbon source
a-Cyclodextrin 20 mM
-0.4
+0.1
+0.3
+0.1
+0.5
biofilm assay; biofilm sample
biofilm; Day2; NLDM;
-0.3
+0.4
+0.1
-0.1
+0.5
r2a_control
R2A control
-0.3
+0.1
+0.2
+0.2
+0.5
biofilm assay; planktonic sample
planktonic; Day1; NLDM;
-0.3
-0.0
+0.4
+0.2
+0.5
phage
1C-T2
-0.3
+0.2
+0.1
-0.1
+1.0
stress
R2A with Selective_ion_mix_1 1 X
-0.1
+0.0
+0.1
-0.2
+1.2
stress
R2A with Selective_ion_mix_1 1 X
+0.0
-0.0
+0.0
-0.0
+1.4
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