Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS06245 and LRK54_RS06250 are separated by 106 nucleotidesLRK54_RS06250 and LRK54_RS06255 are separated by 52 nucleotidesLRK54_RS06255 and LRK54_RS06260 are separated by 226 nucleotidesLRK54_RS06260 and LRK54_RS06265 are separated by 86 nucleotides LRK54_RS06245: LRK54_RS06245 - trehalase, at 1,336,837 to 1,338,483 _RS06245 LRK54_RS06250: LRK54_RS06250 - endonuclease/exonuclease/phosphatase family protein, at 1,338,590 to 1,339,441 _RS06250 LRK54_RS06255: LRK54_RS06255 - YbaN family protein, at 1,339,494 to 1,339,862 _RS06255 LRK54_RS06260: LRK54_RS06260 - hypothetical protein, at 1,340,089 to 1,340,835 _RS06260 LRK54_RS06265: LRK54_RS06265 - hypothetical protein, at 1,340,922 to 1,341,617 _RS06265
Group Condition LRK54_RS06245 LRK54_RS06250 LRK54_RS06255 LRK54_RS06260 LRK54_RS06265
stress R2A with bismuth(III) chloride 0.03125 mM -0.0 +0.1 -1.8 -0.0 -0.1
stress R2A with lithium chloride 15.625 mM +0.1 +0.0 -1.5 -0.2 +0.1
phage phage 31.1 +0.5 -0.2 -1.9 +0.3 -0.1
biofilm assay; planktonic sample Planktonic; Day2; SGW; pH7 +0.0 -0.2 -0.8 +0.2 -0.6
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM +0.0 -0.0 -1.4 +0.1 +0.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.1 -0.3 -1.2 +0.3 +0.2
phage 1A-T1 -0.0 +0.1 -1.2 -0.0 +0.1
phage 1E-T1 -0.0 -0.1 -1.4 +0.3 +0.1
stress R2A with Aluminum chloride 6.25 mM -0.1 -0.0 -1.0 -0.0 +0.1
stress R2A_PIPES with Cobalt chloride 256 uM -0.0 +0.1 -1.0 -0.2 +0.1
stress R2A with Selective_ion_mix_1 1 X -0.1 +0.0 -1.0 +0.2 -0.0
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.1 -0.2 -1.1 +0.2 +0.2
stress R2A with Selective_ion_mix_1 1 X -0.1 +0.2 -1.0 -0.0 +0.0
stress R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM +0.0 +0.2 -0.8 +0.1 -0.0
stress R2A with chromate 0.0048828125 mM -0.2 -0.2 +0.6 -0.3 -0.1
stress R2A_PIPES with Aluminum chloride 1.125 mM -0.1 -0.1 +0.5 -0.1 -0.2
stress R2A_PIPES with Nickel (II) chloride 424 uM -0.1 -0.2 +1.0 -0.3 -0.2
phage 4B-T2 -0.1 -0.1 +1.0 -0.1 -0.2
pH R2A pH5 +0.1 -0.1 +0.7 -0.3 +0.1
no stress control no stress control -0.1 -0.2 +0.7 +0.2 +0.2
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM +0.2 -0.2 +0.2 -0.0 +0.5
biofilm assay; planktonic sample planktonic; Day2; NLDM; -0.0 +0.0 +0.9 +0.0 -0.2
stress R2A with Selective_ion_mix_1 1 X -0.0 +0.0 +1.0 +0.0 -0.1
stress R2A with Magnesium sulfate 3.90625 mM +0.1 +0.1 +0.8 -0.1 +0.1
phage 1C-T2 -0.1 +0.1 +0.7 +0.2 +0.1
phage 4E-T1 +0.1 -0.1 +1.2 +0.0 -0.1
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM +0.1 +0.0 +1.1 +0.1 -0.0
biofilm assay; planktonic sample planktonic; Day2; NLDM; Aluminum chloride 1mM +0.1 +0.0 +1.1 +0.1 +0.2
carbon source a-Cyclodextrin 20 mM +0.1 -0.0 +1.0 +0.2 +0.2
stress R2A with Nickel (II) chloride 0.3125 mM +0.1 +0.0 +1.6 -0.0 +0.0
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