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Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS06245 and LRK54_RS06250 are separated by 106 nucleotides
LRK54_RS06250 and LRK54_RS06255 are separated by 52 nucleotides
LRK54_RS06255 and LRK54_RS06260 are separated by 226 nucleotides
LRK54_RS06260 and LRK54_RS06265 are separated by 86 nucleotides
LRK54_RS06245: LRK54_RS06245 - trehalase, at 1,336,837 to 1,338,483
_RS06245
LRK54_RS06250: LRK54_RS06250 - endonuclease/exonuclease/phosphatase family protein, at 1,338,590 to 1,339,441
_RS06250
LRK54_RS06255: LRK54_RS06255 - YbaN family protein, at 1,339,494 to 1,339,862
_RS06255
LRK54_RS06260: LRK54_RS06260 - hypothetical protein, at 1,340,089 to 1,340,835
_RS06260
LRK54_RS06265: LRK54_RS06265 - hypothetical protein, at 1,340,922 to 1,341,617
_RS06265
Group
Condition
LRK54
_RS06245
LRK54
_RS06250
LRK54
_RS06255
LRK54
_RS06260
LRK54
_RS06265
stress
R2A with bismuth(III) chloride 0.03125 mM
-0.0
+0.1
-1.8
-0.0
-0.1
stress
R2A with lithium chloride 15.625 mM
+0.1
+0.0
-1.5
-0.2
+0.1
phage
phage 31.1
+0.5
-0.2
-1.9
+0.3
-0.1
biofilm assay; planktonic sample
Planktonic; Day2; SGW; pH7
+0.0
-0.2
-0.8
+0.2
-0.6
biofilm assay; biofilm sample
biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
+0.0
-0.0
-1.4
+0.1
+0.1
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-0.1
-0.3
-1.2
+0.3
+0.2
phage
1A-T1
-0.0
+0.1
-1.2
-0.0
+0.1
phage
1E-T1
-0.0
-0.1
-1.4
+0.3
+0.1
stress
R2A with Aluminum chloride 6.25 mM
-0.1
-0.0
-1.0
-0.0
+0.1
stress
R2A_PIPES with Cobalt chloride 256 uM
-0.0
+0.1
-1.0
-0.2
+0.1
stress
R2A with Selective_ion_mix_1 1 X
-0.1
+0.0
-1.0
+0.2
-0.0
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
+0.1
-0.2
-1.1
+0.2
+0.2
stress
R2A with Selective_ion_mix_1 1 X
-0.1
+0.2
-1.0
-0.0
+0.0
stress
R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
+0.0
+0.2
-0.8
+0.1
-0.0
stress
R2A with chromate 0.0048828125 mM
-0.2
-0.2
+0.6
-0.3
-0.1
stress
R2A_PIPES with Aluminum chloride 1.125 mM
-0.1
-0.1
+0.5
-0.1
-0.2
stress
R2A_PIPES with Nickel (II) chloride 424 uM
-0.1
-0.2
+1.0
-0.3
-0.2
phage
4B-T2
-0.1
-0.1
+1.0
-0.1
-0.2
pH
R2A pH5
+0.1
-0.1
+0.7
-0.3
+0.1
no stress control
no stress control
-0.1
-0.2
+0.7
+0.2
+0.2
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
+0.2
-0.2
+0.2
-0.0
+0.5
biofilm assay; planktonic sample
planktonic; Day2; NLDM;
-0.0
+0.0
+0.9
+0.0
-0.2
stress
R2A with Selective_ion_mix_1 1 X
-0.0
+0.0
+1.0
+0.0
-0.1
stress
R2A with Magnesium sulfate 3.90625 mM
+0.1
+0.1
+0.8
-0.1
+0.1
phage
1C-T2
-0.1
+0.1
+0.7
+0.2
+0.1
phage
4E-T1
+0.1
-0.1
+1.2
+0.0
-0.1
biofilm assay; biofilm sample
biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
+0.1
+0.0
+1.1
+0.1
-0.0
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Aluminum chloride 1mM
+0.1
+0.0
+1.1
+0.1
+0.2
carbon source
a-Cyclodextrin 20 mM
+0.1
-0.0
+1.0
+0.2
+0.2
stress
R2A with Nickel (II) chloride 0.3125 mM
+0.1
+0.0
+1.6
-0.0
+0.0
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