Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS05940 and LRK54_RS05945 are separated by 199 nucleotidesLRK54_RS05945 and LRK54_RS05950 are separated by 174 nucleotidesLRK54_RS05950 and LRK54_RS05955 are separated by 40 nucleotidesLRK54_RS05955 and LRK54_RS05960 are separated by 52 nucleotides LRK54_RS05940: LRK54_RS05940 - hypothetical protein, at 1,281,311 to 1,281,550 _RS05940 LRK54_RS05945: LRK54_RS05945 - hypothetical protein, at 1,281,750 to 1,282,001 _RS05945 LRK54_RS05950: LRK54_RS05950 - tRNA-Thr, at 1,282,176 to 1,282,251 _RS05950 LRK54_RS05955: LRK54_RS05955 - SPOR domain-containing protein, at 1,282,292 to 1,282,957 _RS05955 LRK54_RS05960: LRK54_RS05960 - type III pantothenate kinase, at 1,283,010 to 1,283,750 _RS05960
Group Condition LRK54_RS05940 LRK54_RS05945 LRK54_RS05950 LRK54_RS05955 LRK54_RS05960
stress R2A with Selective_ion_mix_1 1 X -0.5 -1.5 N.D. -0.0 N.D.
phage 2F-T2 -0.2 -1.4 N.D. -0.2 N.D.
phage S3-T1 -0.2 -1.2 N.D. -0.0 N.D.
stress R2A with Cobalt chloride 0.15625 mM -1.1 -0.3 N.D. -0.0 N.D.
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.3 -1.0 N.D. -0.1 N.D.
phage 4E-T1 -1.0 +0.0 N.D. -0.3 N.D.
phage 2E-T1 -0.7 -0.1 N.D. -0.3 N.D.
phage 3C-T2 -0.6 -0.3 N.D. -0.2 N.D.
no phage control No phage control -0.3 -0.6 N.D. -0.1 N.D.
stress R2A with Zinc chloride 0.625 mM -0.8 -0.3 N.D. +0.1 N.D.
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -1.4 +0.3 N.D. +0.2 N.D.
stress R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM -0.8 +0.2 N.D. -0.2 N.D.
biofilm assay; planktonic sample planktonic; Day2; NLDM; Aluminum chloride 1mM -0.4 -0.6 N.D. +0.3 N.D.
phage 2A-T2 -0.7 +0.4 N.D. -0.3 N.D.
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.3 -1.1 N.D. +0.2 N.D.
stress R2A with chromate 0.0048828125 mM +0.5 -0.7 N.D. -0.2 N.D.
r2a_control R2A control +0.3 -0.7 N.D. -0.1 N.D.
biofilm assay; planktonic sample Planktonic; Day2; SGW; pH7 +0.3 -0.9 N.D. +0.1 N.D.
biofilm assay; biofilm sample biofilm; Day2; NLDM; +0.5 -0.9 N.D. +0.1 N.D.
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.7 +0.6 N.D. -0.1 N.D.
biofilm assay; planktonic sample planktonic; Day2; NLDM; Aluminum chloride 1mM -0.6 +0.5 N.D. -0.0 N.D.
carbon source acetate 20 mM -0.5 +0.8 N.D. -0.0 N.D.
stress R2A with silver chloride 1 mM -0.2 +0.9 N.D. -0.1 N.D.
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.3 +0.6 N.D. +0.3 N.D.
stress R2A_PIPES with Nickel (II) chloride 424 uM -0.2 +0.9 N.D. -0.0 N.D.
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors -0.3 +1.0 N.D. -0.0 N.D.
biofilm assay; planktonic sample planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM +0.4 +0.5 N.D. -0.1 N.D.
phage 1E-T1 -0.1 +1.0 N.D. -0.0 N.D.
carbon source a-Cyclodextrin 20 mM -0.1 +1.0 N.D. +0.1 N.D.
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors +0.4 +0.6 N.D. +0.1 N.D.
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