Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS05855 and LRK54_RS05860 are separated by 87 nucleotidesLRK54_RS05860 and LRK54_RS05865 are separated by 167 nucleotidesLRK54_RS05865 and LRK54_RS05870 are separated by 106 nucleotidesLRK54_RS05870 and LRK54_RS05875 are separated by 371 nucleotides LRK54_RS05855: LRK54_RS05855 - MarR family transcriptional regulator, at 1,262,658 to 1,263,119 _RS05855 LRK54_RS05860: LRK54_RS05860 - peptide MFS transporter, at 1,263,207 to 1,264,718 _RS05860 LRK54_RS05865: LRK54_RS05865 - peptide MFS transporter, at 1,264,886 to 1,266,394 _RS05865 LRK54_RS05870: LRK54_RS05870 - tryptophan 2,3-dioxygenase family protein, at 1,266,501 to 1,267,349 _RS05870 LRK54_RS05875: LRK54_RS05875 - pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha, at 1,267,721 to 1,268,806 _RS05875
Group Condition LRK54_RS05855 LRK54_RS05860 LRK54_RS05865 LRK54_RS05870 LRK54_RS05875
stress R2A with lithium chloride 15.625 mM -3.5 +0.1 +0.1 -0.1 N.D.
stress R2A with silver chloride 1 mM -2.0 +0.1 +0.2 -0.3 N.D.
biofilm assay; planktonic sample planktonic; Day2; NLDM; Aluminum chloride 1mM -1.0 +0.0 -0.0 -0.3 N.D.
stress R2A with Zinc chloride 0.625 mM -1.2 -0.1 +0.1 -0.1 N.D.
carbon source Gly-Glu 20 mM -1.2 +0.0 +0.1 -0.1 N.D.
stress R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM -1.2 -0.1 +0.0 +0.1 N.D.
stress R2A with Cadmium chloride hemipentahydrate 0.0390625 mM -1.3 +0.1 -0.0 +0.1 N.D.
biofilm assay; biofilm sample biofilm; Day2; NLDM; -1.2 -0.3 +0.1 +0.3 N.D.
biofilm assay; planktonic sample planktonic; Day2; NLDM; -1.2 +0.0 +0.0 -0.0 N.D.
r2a_control R2A control -1.1 +0.0 +0.2 -0.2 N.D.
stress R2A with ammonium iron(II) sulfate 2.5 mM -1.1 +0.0 +0.1 -0.1 N.D.
biofilm assay; planktonic sample Planktonic; Day2; SGW; pH7 -1.5 +0.0 +0.0 +0.4 N.D.
stress R2A with Cobalt chloride 0.078125 mM -1.3 +0.1 +0.1 +0.0 N.D.
stress R2A with Cobalt chloride 0.15625 mM -0.6 +0.0 +0.1 -0.5 N.D.
biofilm assay; planktonic sample planktonic; Day2; NLDM; Aluminum chloride 1mM -1.2 -0.0 +0.2 +0.1 N.D.
stress R2A with bismuth(III) chloride 0.03125 mM -1.1 +0.2 +0.1 -0.1 N.D.
stress R2A with Gallium(III)chloride 0.78125 mM -1.1 +0.1 +0.1 -0.0 N.D.
stress R2A with Nickel (II) chloride 0.3125 mM -1.0 +0.1 +0.1 -0.1 N.D.
pH R2A_PIPES pH 4.25 -1.0 -0.0 -0.2 +0.3 N.D.
stress R2A with Gallium(III)chloride 0.78125 mM -0.9 +0.0 +0.1 -0.1 N.D.
pH R2A_PIPES pH 4.25 -1.2 +0.1 +0.0 +0.2 N.D.
stress R2A with Cesium chloride 3.90625 mM -1.1 +0.1 +0.2 -0.0 N.D.
stress R2A with Cesium chloride 3.90625 mM -0.9 +0.1 +0.2 -0.2 N.D.
no stress control no stress control -0.8 +0.1 -0.0 +0.3 N.D.
stress R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM -0.6 +0.2 +0.2 -0.3 N.D.
stress R2A with Strontium chloride 3.90625 mM -0.7 +0.4 +0.1 -0.2 N.D.
stress R2A_PIPES with Cobalt chloride 256 uM -0.8 +0.2 +0.0 +0.2 N.D.
carbon source a-Cyclodextrin 20 mM -0.5 -0.3 -0.1 +0.5 N.D.
carbon source a-Cyclodextrin 20 mM -0.6 -0.1 -0.1 +0.5 N.D.
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.7 +0.2 +0.4 -0.0 N.D.
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