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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS05850 and LRK54_RS05855 are separated by 109 nucleotides
LRK54_RS05855 and LRK54_RS05860 are separated by 87 nucleotides
LRK54_RS05860 and LRK54_RS05865 are separated by 167 nucleotides
LRK54_RS05865 and LRK54_RS05870 are separated by 106 nucleotides
LRK54_RS05850: LRK54_RS05850 - 4-hydroxyphenylpyruvate dioxygenase, at 1,261,463 to 1,262,548
_RS05850
LRK54_RS05855: LRK54_RS05855 - MarR family transcriptional regulator, at 1,262,658 to 1,263,119
_RS05855
LRK54_RS05860: LRK54_RS05860 - peptide MFS transporter, at 1,263,207 to 1,264,718
_RS05860
LRK54_RS05865: LRK54_RS05865 - peptide MFS transporter, at 1,264,886 to 1,266,394
_RS05865
LRK54_RS05870: LRK54_RS05870 - tryptophan 2,3-dioxygenase family protein, at 1,266,501 to 1,267,349
_RS05870
Group
Condition
LRK54
_RS05850
LRK54
_RS05855
LRK54
_RS05860
LRK54
_RS05865
LRK54
_RS05870
stress
R2A with lithium chloride 15.625 mM
+0.9
-3.5
+0.1
+0.1
-0.1
stress
R2A with silver chloride 1 mM
+0.6
-2.0
+0.1
+0.2
-0.3
carbon source
acetate 20 mM
-0.6
-0.8
+0.2
-0.1
+0.1
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Aluminum chloride 1mM
+0.2
-1.0
+0.0
-0.0
-0.3
stress
R2A with Zinc chloride 0.625 mM
+0.1
-1.2
-0.1
+0.1
-0.1
biofilm assay; biofilm sample
biofilm; Day2; NLDM;
+0.1
-1.2
-0.3
+0.1
+0.3
carbon source
a-Cyclodextrin 20 mM
-0.7
-0.5
-0.3
-0.1
+0.5
stress
R2A with Cobalt chloride 0.078125 mM
+0.1
-1.3
+0.1
+0.1
+0.0
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Aluminum chloride 1mM
+0.0
-1.2
-0.0
+0.2
+0.1
pH
R2A_PIPES pH 4.25
+0.0
-1.0
-0.0
-0.2
+0.3
carbon source
Gly-Glu 20 mM
+0.3
-1.2
+0.0
+0.1
-0.1
carbon source
acetate 20 mM
-0.7
-0.5
+0.1
-0.1
+0.3
stress
R2A with Cadmium chloride hemipentahydrate 0.0390625 mM
+0.4
-1.3
+0.1
-0.0
+0.1
stress
R2A with ammonium iron(II) sulfate 2.5 mM
+0.3
-1.1
+0.0
+0.1
-0.1
pH
R2A_PIPES pH 4.25
+0.1
-1.2
+0.1
+0.0
+0.2
biofilm assay; planktonic sample
Planktonic; Day2; SGW; pH7
+0.3
-1.5
+0.0
+0.0
+0.4
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
+0.5
-1.2
-0.1
+0.0
+0.1
carbon source
a-Cyclodextrin 20 mM
-0.4
-0.6
-0.1
-0.1
+0.5
stress
R2A with Nickel (II) chloride 0.3125 mM
+0.4
-1.0
+0.1
+0.1
-0.1
stress
R2A with Ferric chloride 1.5625 mM
+0.2
-0.9
+0.1
+0.1
-0.1
stress
R2A with Cesium chloride 3.90625 mM
+0.4
-1.1
+0.1
+0.2
-0.0
stress
R2A with Cesium chloride 3.90625 mM
+0.5
-0.9
+0.1
+0.2
-0.2
stress
R2A with bismuth(III) chloride 0.03125 mM
+0.8
-1.1
+0.2
+0.1
-0.1
stress
R2A_PIPES with Cobalt chloride 256 uM
+0.3
-0.8
+0.2
+0.0
+0.2
stress
R2A with lithium chloride 15.625 mM
+0.6
-0.8
+0.1
+0.2
-0.1
stress
R2A with Strontium chloride 3.90625 mM
+0.4
-0.7
+0.4
+0.1
-0.2
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
+0.2
-0.7
+0.2
+0.4
-0.0
r2a_control
R2A control
+0.4
-0.5
+0.1
+0.3
-0.1
stress
R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
+0.8
-0.6
+0.2
+0.2
-0.3
stress
R2A with silver chloride 1 mM
+0.7
-0.2
+0.1
+0.3
-0.2
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