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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS05840 and LRK54_RS05845 are separated by 37 nucleotides
LRK54_RS05845 and LRK54_RS05850 are separated by 11 nucleotides
LRK54_RS05850 and LRK54_RS05855 are separated by 109 nucleotides
LRK54_RS05855 and LRK54_RS05860 are separated by 87 nucleotides
LRK54_RS05840: LRK54_RS05840 - fumarylacetoacetate hydrolase family protein, at 1,259,129 to 1,260,115
_RS05840
LRK54_RS05845: LRK54_RS05845 - homogentisate 1,2-dioxygenase, at 1,260,153 to 1,261,451
_RS05845
LRK54_RS05850: LRK54_RS05850 - 4-hydroxyphenylpyruvate dioxygenase, at 1,261,463 to 1,262,548
_RS05850
LRK54_RS05855: LRK54_RS05855 - MarR family transcriptional regulator, at 1,262,658 to 1,263,119
_RS05855
LRK54_RS05860: LRK54_RS05860 - peptide MFS transporter, at 1,263,207 to 1,264,718
_RS05860
Group
Condition
LRK54
_RS05840
LRK54
_RS05845
LRK54
_RS05850
LRK54
_RS05855
LRK54
_RS05860
stress
R2A with lithium chloride 15.625 mM
N.D.
-0.9
+0.9
-3.5
+0.1
stress
R2A with silver chloride 1 mM
N.D.
-1.2
+0.6
-2.0
+0.1
r2a_control
R2A control
N.D.
-0.8
-0.0
-1.1
+0.0
stress
R2A with Chloride 250 mM
N.D.
-0.7
-0.8
-0.3
+0.1
stress
R2A with Chloride 250 mM
N.D.
-0.6
-0.4
-0.7
-0.0
carbon source
D-Glucose-6-Phosphate 20 mM
N.D.
-0.8
-0.4
-0.6
+0.0
carbon source
acetate 20 mM
N.D.
-0.3
-0.6
-0.8
+0.2
stress
R2A with Magnesium sulfate 3.90625 mM
N.D.
-0.8
+0.2
-0.9
-0.0
stress
R2A with Chloride 250 mM
N.D.
-0.9
-0.8
+0.0
+0.1
stress
R2A with selenate 31.25 mM
N.D.
-0.7
+0.1
-0.9
-0.1
stress
R2A with Ferric chloride 1.5625 mM
N.D.
-0.9
+0.2
-0.9
+0.1
stress
R2A with Cesium chloride 3.90625 mM
N.D.
-0.9
+0.4
-1.1
+0.1
carbon source
pyruvate 20 mM
N.D.
-0.6
-0.3
-0.7
+0.1
carbon source
Gly-Glu 20 mM
N.D.
-0.6
+0.3
-1.2
+0.0
stress
R2A with ammonium iron(II) sulfate 2.5 mM
N.D.
-0.6
+0.3
-1.1
+0.0
biofilm assay; planktonic sample
planktonic; Day2; NLDM;
N.D.
-0.4
+0.2
-1.2
+0.0
stress
R2A with Cesium chloride 3.90625 mM
N.D.
-1.1
+0.5
-0.9
+0.1
stress
R2A with bismuth(III) chloride 0.03125 mM
N.D.
-0.9
+0.2
-0.8
+0.1
biofilm assay; planktonic sample
Planktonic; Day2; SGW; pH7
N.D.
-0.1
+0.3
-1.5
+0.0
stress
R2A with Magnesium sulfate 3.90625 mM
N.D.
-1.1
+0.2
-0.3
+0.1
stress
R2A with bismuth(III) chloride 0.03125 mM
N.D.
-1.0
+0.8
-1.1
+0.2
stress
R2A with Nickel (II) chloride 0.3125 mM
N.D.
-0.5
+0.4
-1.0
+0.1
stress
R2A with Cadmium chloride hemipentahydrate 0.0390625 mM
N.D.
-0.2
+0.4
-1.3
+0.1
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
N.D.
-0.1
+0.5
-1.2
-0.1
stress
R2A with lithium chloride 15.625 mM
N.D.
-0.7
+0.6
-0.8
+0.1
stress
R2A with ammonium iron(II) sulfate 2.5 mM
N.D.
-1.0
+0.5
-0.5
+0.1
carbon source
Gly-Glu 20 mM
N.D.
-0.8
+0.4
-0.5
+0.1
stress
R2A with Strontium chloride 3.90625 mM
N.D.
-0.7
+0.4
-0.7
+0.4
stress
R2A with silver chloride 1 mM
N.D.
-1.1
+0.7
-0.2
+0.1
stress
R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
N.D.
-0.5
+0.8
-0.6
+0.2
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