Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS05455 and LRK54_RS05460 are separated by 98 nucleotidesLRK54_RS05460 and LRK54_RS05465 are separated by 26 nucleotidesLRK54_RS05465 and LRK54_RS05470 are separated by 117 nucleotidesLRK54_RS05470 and LRK54_RS05475 overlap by 16 nucleotides LRK54_RS05455: LRK54_RS05455 - monofunctional biosynthetic peptidoglycan transglycosylase, at 1,177,301 to 1,178,041 _RS05455 LRK54_RS05460: LRK54_RS05460 - CBS domain-containing protein, at 1,178,140 to 1,178,568 _RS05460 LRK54_RS05465: LRK54_RS05465 - MFS transporter, at 1,178,595 to 1,179,857 _RS05465 LRK54_RS05470: LRK54_RS05470 - choline dehydrogenase, at 1,179,975 to 1,181,585 _RS05470 LRK54_RS05475: LRK54_RS05475 - M48 family metallopeptidase, at 1,181,570 to 1,183,483 _RS05475
Group Condition LRK54_RS05455 LRK54_RS05460 LRK54_RS05465 LRK54_RS05470 LRK54_RS05475
stress R2A with Manganese (II) chloride tetrahydrate 6.25 mM -1.7 -0.1 -0.0 -0.0 -0.2
stress R2A with Manganese (II) chloride tetrahydrate 6.25 mM -1.8 -0.1 +0.0 -0.1 -0.0
stress R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM -1.1 -0.1 -0.0 -0.0 -0.2
stress R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM -1.0 -0.0 +0.2 -0.0 -0.2
stress R2A with Manganese (II) chloride tetrahydrate 3.125 mM -0.8 +0.0 -0.2 +0.0 -0.1
biofilm assay; planktonic sample Planktonic; Day4; SGW; pH7 -0.3 +0.1 +0.3 -0.2 -1.0
stress R2A with Manganese (II) chloride tetrahydrate 3.125 mM -0.8 -0.1 +0.0 +0.0 +0.1
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors +0.1 -0.2 +0.5 -0.2 -1.0
stress R2A with bismuth(III) chloride 0.03125 mM +0.0 +0.2 -0.2 -0.3 -0.5
stress R2A with Selective_ion_mix_1 1 X -0.0 -0.2 +0.2 -0.2 -0.3
stress R2A_PIPES with Nickel (II) chloride 424 uM +0.0 -0.4 -0.0 +0.1 -0.2
phage 4B-T2 +0.2 +0.0 -0.4 -0.1 -0.2
stress R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM +0.3 -0.3 +0.1 -0.2 -0.4
phage 3C-T2 +0.0 +0.1 +0.1 -0.1 -0.5
pH R2A pH5 -0.2 +0.1 +0.1 -0.1 -0.4
stress R2A with beryllium sulfate tetrahydrate 1.953125 mM +0.1 -0.1 +0.3 -0.2 -0.4
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.4 -0.1 -0.1 +0.3 +0.1
phage 1E-T2 -0.1 +0.2 -0.4 +0.1 -0.0
no stress control no stress control +0.0 -0.1 +0.2 +0.1 -0.5
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors +0.0 +0.2 +0.2 -0.3 -0.2
biofilm assay; planktonic sample planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.2 +0.2 -0.1 +0.1 -0.2
phage 1E-T1 +0.1 +0.2 -0.4 +0.1 -0.1
anaerobic Anaerobic, acetate donor; nitrate electron acceptor -0.1 +0.2 -0.3 +0.1 -0.1
stress R2A with Aluminum chloride 3.125 mM -0.2 +0.1 +0.4 -0.1 -0.2
stress R2A with beryllium sulfate tetrahydrate 1.953125 mM +0.0 +0.1 +0.4 -0.1 -0.3
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.3 -0.2 +0.2 +0.2 +0.3
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.2 +0.3 +0.3 +0.2 -0.3
stress R2A with chromate 0.0048828125 mM -0.2 -0.2 +0.1 -0.0 +0.6
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.2 -0.1 +0.1 -0.0 +0.4
phage 2A-T2 +0.0 +0.5 +0.1 +0.0 +0.4
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