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Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS05455 and LRK54_RS05460 are separated by 98 nucleotides
LRK54_RS05460 and LRK54_RS05465 are separated by 26 nucleotides
LRK54_RS05465 and LRK54_RS05470 are separated by 117 nucleotides
LRK54_RS05470 and LRK54_RS05475 overlap by 16 nucleotides
LRK54_RS05455: LRK54_RS05455 - monofunctional biosynthetic peptidoglycan transglycosylase, at 1,177,301 to 1,178,041
_RS05455
LRK54_RS05460: LRK54_RS05460 - CBS domain-containing protein, at 1,178,140 to 1,178,568
_RS05460
LRK54_RS05465: LRK54_RS05465 - MFS transporter, at 1,178,595 to 1,179,857
_RS05465
LRK54_RS05470: LRK54_RS05470 - choline dehydrogenase, at 1,179,975 to 1,181,585
_RS05470
LRK54_RS05475: LRK54_RS05475 - M48 family metallopeptidase, at 1,181,570 to 1,183,483
_RS05475
Group
Condition
LRK54
_RS05455
LRK54
_RS05460
LRK54
_RS05465
LRK54
_RS05470
LRK54
_RS05475
stress
R2A with Manganese (II) chloride tetrahydrate 6.25 mM
-1.7
-0.1
-0.0
-0.0
-0.2
stress
R2A with Manganese (II) chloride tetrahydrate 6.25 mM
-1.8
-0.1
+0.0
-0.1
-0.0
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
-1.1
-0.1
-0.0
-0.0
-0.2
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
-1.0
-0.0
+0.2
-0.0
-0.2
stress
R2A with Manganese (II) chloride tetrahydrate 3.125 mM
-0.8
+0.0
-0.2
+0.0
-0.1
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
-0.3
+0.1
+0.3
-0.2
-1.0
stress
R2A with Manganese (II) chloride tetrahydrate 3.125 mM
-0.8
-0.1
+0.0
+0.0
+0.1
anaerobic
Anaerobic, acetate donor; nitrate and iron electron acceptors
+0.1
-0.2
+0.5
-0.2
-1.0
stress
R2A with bismuth(III) chloride 0.03125 mM
+0.0
+0.2
-0.2
-0.3
-0.5
stress
R2A with Selective_ion_mix_1 1 X
-0.0
-0.2
+0.2
-0.2
-0.3
stress
R2A_PIPES with Nickel (II) chloride 424 uM
+0.0
-0.4
-0.0
+0.1
-0.2
phage
4B-T2
+0.2
+0.0
-0.4
-0.1
-0.2
stress
R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
+0.3
-0.3
+0.1
-0.2
-0.4
phage
3C-T2
+0.0
+0.1
+0.1
-0.1
-0.5
pH
R2A pH5
-0.2
+0.1
+0.1
-0.1
-0.4
stress
R2A with beryllium sulfate tetrahydrate 1.953125 mM
+0.1
-0.1
+0.3
-0.2
-0.4
biofilm assay; biofilm sample
biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
-0.4
-0.1
-0.1
+0.3
+0.1
phage
1E-T2
-0.1
+0.2
-0.4
+0.1
-0.0
no stress control
no stress control
+0.0
-0.1
+0.2
+0.1
-0.5
anaerobic
Anaerobic, acetate donor; nitrate and iron electron acceptors
+0.0
+0.2
+0.2
-0.3
-0.2
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
-0.2
+0.2
-0.1
+0.1
-0.2
phage
1E-T1
+0.1
+0.2
-0.4
+0.1
-0.1
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
-0.1
+0.2
-0.3
+0.1
-0.1
stress
R2A with Aluminum chloride 3.125 mM
-0.2
+0.1
+0.4
-0.1
-0.2
stress
R2A with beryllium sulfate tetrahydrate 1.953125 mM
+0.0
+0.1
+0.4
-0.1
-0.3
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-0.3
-0.2
+0.2
+0.2
+0.3
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-0.2
+0.3
+0.3
+0.2
-0.3
stress
R2A with chromate 0.0048828125 mM
-0.2
-0.2
+0.1
-0.0
+0.6
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
+0.2
-0.1
+0.1
-0.0
+0.4
phage
2A-T2
+0.0
+0.5
+0.1
+0.0
+0.4
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