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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS05150 and LRK54_RS05155 overlap by 4 nucleotides
LRK54_RS05155 and LRK54_RS05160 overlap by 4 nucleotides
LRK54_RS05160 and LRK54_RS05165 overlap by 1 nucleotides
LRK54_RS05165 and LRK54_RS05170 overlap by 14 nucleotides
LRK54_RS05150: LRK54_RS05150 - glycosyltransferase, at 1,106,144 to 1,107,091
_RS05150
LRK54_RS05155: LRK54_RS05155 - O-antigen translocase, at 1,107,088 to 1,108,344
_RS05155
LRK54_RS05160: LRK54_RS05160 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 1,108,341 to 1,109,498
_RS05160
LRK54_RS05165: LRK54_RS05165 - GNAT family N-acetyltransferase, at 1,109,498 to 1,110,430
_RS05165
LRK54_RS05170: LRK54_RS05170 - hypothetical protein, at 1,110,417 to 1,111,370
_RS05170
Group
Condition
LRK54
_RS05150
LRK54
_RS05155
LRK54
_RS05160
LRK54
_RS05165
LRK54
_RS05170
biofilm assay; planktonic sample
planktonic; Day1; NLDM;
-0.7
-0.3
-0.2
-0.3
-0.1
stress
R2A with lithium chloride 15.625 mM
-0.2
-0.2
-0.2
-0.5
-0.3
stress
R2A with Nickel (II) chloride 0.3125 mM
-0.6
-0.0
-0.3
-0.4
-0.2
biofilm assay; planktonic sample
Planktonic; Day2; SGW; pH7
-0.3
-0.4
-0.3
-0.2
-0.2
r2a_control
R2A control
-0.4
-0.1
-0.2
-0.3
-0.1
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-0.8
-0.2
-0.1
-0.4
+0.3
r2a_control
R2A control
-0.3
-0.2
-0.3
-0.3
-0.0
stress
R2A with Nickel (II) chloride 0.3125 mM
-0.7
-0.0
+0.1
-0.3
-0.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.7
-0.0
-0.1
-0.3
+0.2
carbon source
D-Glucose (C) and 20 AA mix; 30C
-0.2
-0.2
+0.1
-0.4
-0.1
r2a_control
R2A control
-0.2
-0.1
-0.1
-0.4
+0.1
stress
R2A with Manganese (II) chloride tetrahydrate 0.625 mM
-0.2
-0.2
-0.0
-0.4
+0.1
stress
R2A with m-arsenite 0.0390625 mM
-0.2
+0.1
-0.1
-0.3
-0.2
stress
R2A with nitrite 50 mM
-0.0
-0.2
-0.3
-0.4
+0.1
anaerobic
Anaerobic, acetate donor; nitrate and iron electron acceptors
-0.6
-0.2
+0.2
-0.1
+0.1
carbon source
D-Glucose (C) and 20 AA mix; 20C
-0.1
-0.3
+0.2
-0.3
+0.0
stress
R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
+0.5
-0.1
+0.0
-0.3
-0.5
stress
R2A with Cesium chloride 3.90625 mM
+0.4
-0.1
-0.2
-0.3
-0.3
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
+0.5
-0.2
-0.2
-0.2
-0.3
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
+0.1
-0.0
-0.7
+0.2
+0.1
phage
4E-T1
-0.7
+0.0
+0.0
+0.2
+0.2
biofilm assay; biofilm sample
biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
-0.2
+0.0
+0.2
-0.4
+0.2
stress
R2A with Calcium chloride 125 mM
+0.3
-0.0
-0.4
-0.1
+0.0
phage
2F-T1
-0.5
-0.0
+0.1
-0.1
+0.3
phage
2B-T1
-0.5
-0.1
+0.1
+0.1
+0.3
r2a_control
R2A control
+0.3
+0.0
-0.3
-0.3
+0.1
biofilm assay; biofilm sample
biofilm; Day2; NLDM;
+0.3
+0.3
-0.2
-0.1
-0.1
phage
phage 31.1
+0.6
-0.1
-0.3
+0.0
+0.1
phage
1A-T1
+0.3
+0.2
+0.0
+0.2
+0.4
stress
R2A with Cobalt chloride 0.15625 mM
+0.4
+0.3
+0.2
+0.2
+0.1
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