Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS05045 and LRK54_RS05050 are separated by 103 nucleotidesLRK54_RS05050 and LRK54_RS05055 are separated by 205 nucleotidesLRK54_RS05055 and LRK54_RS05060 are separated by 1 nucleotidesLRK54_RS05060 and LRK54_RS05065 overlap by 4 nucleotides LRK54_RS05045: LRK54_RS05045 - ATP-binding protein, at 1,078,641 to 1,080,404 _RS05045 LRK54_RS05050: LRK54_RS05050 - GH92 family glycosyl hydrolase, at 1,080,508 to 1,082,787 _RS05050 LRK54_RS05055: LRK54_RS05055 - L-fucose:H+ symporter permease, at 1,082,993 to 1,084,330 _RS05055 LRK54_RS05060: LRK54_RS05060 - carbohydrate kinase, at 1,084,332 to 1,085,312 _RS05060 LRK54_RS05065: LRK54_RS05065 - AGE family epimerase/isomerase, at 1,085,309 to 1,086,535 _RS05065
Group Condition LRK54_RS05045 LRK54_RS05050 LRK54_RS05055 LRK54_RS05060 LRK54_RS05065
carbon source D-Glucose-6-Phosphate 20 mM +0.2 +0.2 -1.9 -0.6 -0.1
stress R2A with Zinc chloride 0.625 mM +0.0 +0.1 -0.0 -2.4 +0.2
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.0 -0.3 +0.2 -1.6 -0.1
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM +0.1 +0.1 -0.3 -1.5 -0.2
stress R2A with chromate 0.0048828125 mM -0.0 +0.3 +0.1 -2.4 +0.3
stress R2A with Nickel (II) chloride 0.3125 mM -0.8 -0.5 +0.8 -1.1 +0.2
carbon source D-Glucose-6-Phosphate 20 mM +0.4 +0.5 -2.4 +0.2 -0.1
stress R2A with beryllium sulfate tetrahydrate 1.953125 mM -0.1 -0.4 +0.4 -1.1 +0.2
carbon source D-Glucose 20 mM +0.2 +0.5 -1.4 -0.1 -0.0
carbon source D-Glucose 20 mM +0.1 +0.5 -1.3 +0.3 -0.1
stress R2A with Chloride 250 mM +0.1 -0.5 +0.4 -0.8 +0.2
stress R2A with nitrite 25 mM +0.2 -0.7 +0.9 -0.6 +0.1
stress R2A with Nickel (II) chloride 0.3125 mM -0.4 -0.6 +0.8 +0.4 +0.1
stress R2A with Aluminum chloride 3.125 mM -1.3 -0.2 +0.8 +0.8 +0.2
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors -0.7 -0.3 +0.3 +1.1 +0.0
stress R2A with bismuth(III) chloride 0.03125 mM -0.1 -1.1 +0.5 +0.8 +0.3
stress R2A with Zinc chloride 0.625 mM -0.1 -0.8 +1.1 +0.1 +0.2
stress R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM -0.1 -0.7 +0.9 +0.4 +0.1
stress R2A with Zinc chloride 0.625 mM -0.1 -0.8 +1.2 +0.3 +0.3
stress R2A with silver chloride 1 mM +0.2 -0.5 +0.5 +0.5 +0.2
stress R2A with Cobalt chloride 0.15625 mM -0.3 -0.4 +1.3 +0.2 +0.1
stress R2A with nitrite 50 mM -0.0 -0.7 +1.2 +0.2 +0.3
phage 4E-T2 -0.3 +0.1 +0.2 +1.3 -0.2
stress R2A with nitrite 50 mM +0.0 -0.7 +1.4 +0.6 +0.3
stress R2A with SpecU metal mix 1 X +0.2 -0.6 +2.0 -0.1 +0.2
stress R2A with Cobalt chloride 0.15625 mM -0.4 -0.3 +1.3 +1.0 +0.1
phage SA-T1 -0.2 -0.0 +0.2 +1.5 +0.2
stress R2A with Calcium chloride 250 mM +0.2 -0.5 +0.8 +1.0 +0.3
phage 1E-T1 -0.1 +0.0 +0.0 +1.6 +0.3
stress R2A with SpecU metal mix 1 X +0.3 -0.6 +1.9 +0.1 +0.2
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