Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS04935 and LRK54_RS04940 are separated by 102 nucleotidesLRK54_RS04940 and LRK54_RS04945 are separated by 291 nucleotidesLRK54_RS04945 and LRK54_RS04950 are separated by 340 nucleotidesLRK54_RS04950 and LRK54_RS04955 are separated by 87 nucleotides LRK54_RS04935: LRK54_RS04935 - DUF3011 domain-containing protein, at 1,045,715 to 1,046,347 _RS04935 LRK54_RS04940: LRK54_RS04940 - zinc ribbon domain-containing protein, at 1,046,450 to 1,046,746 _RS04940 LRK54_RS04945: LRK54_RS04945 - TonB-dependent receptor, at 1,047,038 to 1,049,410 _RS04945 LRK54_RS04950: LRK54_RS04950 - CsgG/HfaB family protein, at 1,049,751 to 1,050,236 _RS04950 LRK54_RS04955: LRK54_RS04955 - ATP-dependent chaperone ClpB, at 1,050,324 to 1,052,915 _RS04955
Group Condition LRK54_RS04935 LRK54_RS04940 LRK54_RS04945 LRK54_RS04950 LRK54_RS04955
stress R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM -0.3 -2.2 +0.2 -0.0 -0.2
carbon source D-Glucose-6-Phosphate 20 mM +0.1 +0.1 -0.0 +0.1 -2.7
stress R2A with chromate 0.0048828125 mM +0.0 -2.2 -0.1 -0.1 +0.2
carbon source a-Cyclodextrin 20 mM +0.2 -0.5 +0.2 +0.1 -1.9
stress R2A with Manganese (II) chloride tetrahydrate 6.25 mM -0.2 -1.5 +0.1 -0.1 -0.2
carbon source acetate 20 mM +0.1 +0.4 +0.1 +0.1 -2.5
carbon source D-Raffinose 20 mM +0.2 -0.2 -0.0 -0.0 -1.6
carbon source D-Glucose-6-Phosphate 20 mM +0.1 +0.3 +0.0 +0.0 -1.9
carbon source a-Cyclodextrin 20 mM +0.1 -0.7 +0.2 -0.1 -0.8
carbon source acetate 20 mM +0.1 +0.0 +0.0 +0.1 -1.6
biofilm assay; planktonic sample planktonic; Day1; NLDM; -0.1 -1.3 +0.1 +0.1 -0.0
stress R2A with Aluminum chloride 3.125 mM -0.2 +0.2 -0.1 -0.1 -0.8
phage S5-T1 +0.1 -0.9 +0.1 -0.1 -0.1
carbon source D-Raffinose 20 mM +0.2 +0.1 +0.0 +0.0 -1.2
stress R2A with nitrite 50 mM +0.0 -0.0 -0.9 -0.1 +0.2
phage 1D-T2 -0.3 -0.3 -0.1 -0.4 +0.5
stress R2A_PIPES with Cobalt chloride 256 uM +0.1 +0.4 -0.9 -0.0 +0.0
stress R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM -0.2 -0.7 +0.2 +0.0 +0.4
carbon source pyruvate 20 mM +0.1 +0.1 +0.2 +0.0 -0.8
stress R2A with nitrite 50 mM +0.1 +0.2 -0.8 -0.1 +0.3
stress R2A_PIPES with Nickel (II) chloride 424 uM -0.5 +0.8 +0.1 +0.0 -0.4
stress R2A with m-arsenite 0.078125 mM +0.3 +0.2 -0.5 +0.0 +0.4
stress R2A with bismuth(III) chloride 0.03125 mM +0.3 +0.1 -0.4 +0.1 +0.4
stress R2A with m-arsenite 0.078125 mM +0.3 +0.5 -0.5 +0.1 +0.3
stress R2A with Calcium chloride 250 mM -0.1 -0.3 +0.4 +0.2 +0.5
phage 1C-T2 -0.2 +0.4 -0.0 +0.1 +0.6
stress R2A with Zinc chloride 0.625 mM +0.1 +0.5 -0.4 +0.1 +0.6
stress R2A with Nickel (II) chloride 0.3125 mM -0.4 +0.5 -0.2 +0.0 +1.3
stress R2A with silver chloride 1 mM +0.3 +0.8 -0.3 +0.0 +0.5
stress R2A with silver chloride 1 mM +0.5 +1.5 -0.3 +0.1 +0.6
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