Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS04780 and LRK54_RS04785 are separated by 2 nucleotidesLRK54_RS04785 and LRK54_RS04790 are separated by 29 nucleotidesLRK54_RS04790 and LRK54_RS04795 are separated by 27 nucleotidesLRK54_RS04795 and LRK54_RS04800 are separated by 105 nucleotides LRK54_RS04780: LRK54_RS04780 - DUF3501 family protein, at 1,016,500 to 1,017,081 _RS04780 LRK54_RS04785: LRK54_RS04785 - hypothetical protein, at 1,017,084 to 1,017,683 _RS04785 LRK54_RS04790: LRK54_RS04790 - adenine phosphoribosyltransferase, at 1,017,713 to 1,018,231 _RS04790 LRK54_RS04795: LRK54_RS04795 - DUF2007 domain-containing protein, at 1,018,259 to 1,018,531 _RS04795 LRK54_RS04800: LRK54_RS04800 - glutamine--tRNA ligase/YqeY domain fusion protein, at 1,018,637 to 1,020,412 _RS04800
Group Condition LRK54_RS04780 LRK54_RS04785 LRK54_RS04790 LRK54_RS04795 LRK54_RS04800
stress R2A with chromate 0.0048828125 mM -1.3 -0.1 -0.6 -0.1 N.D.
stress R2A with Cobalt chloride 0.15625 mM +0.0 -0.1 -1.4 -0.2 N.D.
stress R2A with Zinc chloride 0.625 mM -0.2 -0.4 -0.9 -0.1 N.D.
phage 2E-T1 -1.1 -0.0 -0.2 -0.1 N.D.
phage 2F-T1 -0.7 +0.0 -0.2 -0.4 N.D.
biofilm assay; planktonic sample Planktonic; Day2; SGW; pH7 -1.9 +0.2 +0.5 +0.0 N.D.
phage S5-T2 -1.1 +0.1 +0.3 -0.3 N.D.
biofilm assay; biofilm sample biofilm; Day2; NLDM; -0.8 +0.1 +0.4 -0.4 N.D.
stress R2A with silver chloride 1 mM -0.3 -0.0 -0.7 +0.3 N.D.
stress R2A_PIPES with Metal_ion_mix_sitestressplate 2 x -0.5 +0.1 -0.6 +0.3 N.D.
stress R2A with Selective_ion_mix_1 1 X -0.2 +0.2 -0.8 +0.2 N.D.
stress R2A_PIPES with Nickel (II) chloride 424 uM +0.1 +0.2 -0.7 +0.0 N.D.
carbon source a-Cyclodextrin 20 mM +0.4 -0.3 -0.0 -0.4 N.D.
phage 4E-T2 -0.9 -0.0 +0.4 +0.2 N.D.
r2a_control R2A control -0.4 +0.1 +0.3 -0.3 N.D.
no phage control No phage control -0.6 +0.2 +0.3 -0.1 N.D.
biofilm assay; planktonic sample planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM +0.5 -0.0 -0.7 +0.0 N.D.
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.5 +0.1 +0.6 -0.3 N.D.
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.6 +0.2 +0.5 -0.2 N.D.
biofilm assay; planktonic sample planktonic; Day1; NLDM; +0.5 +0.2 -0.4 -0.1 N.D.
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.1 +0.0 +0.5 -0.5 N.D.
stress R2A with Selective_ion_mix_1 1 X +0.7 -0.1 -0.3 +0.0 N.D.
biofilm assay; planktonic sample planktonic; Day1; NLDM; +0.8 -0.1 -0.2 +0.0 N.D.
phage 4B-T1 +0.1 +0.3 +0.5 -0.3 N.D.
stress R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM -0.3 +0.3 +0.5 +0.1 N.D.
stress R2A with Manganese (II) chloride tetrahydrate 6.25 mM +0.8 +0.2 -0.1 -0.1 N.D.
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM +0.6 +0.1 +0.5 -0.2 N.D.
biofilm assay; planktonic sample Planktonic; Day4; SGW; pH7 +0.8 +0.2 +0.4 -0.3 N.D.
biofilm assay; planktonic sample planktonic; Day2; NLDM; Aluminum chloride 1mM +0.6 +0.0 +0.4 +0.5 N.D.
stress R2A with Nickel (II) chloride 0.3125 mM +0.5 +0.1 +0.5 +0.6 N.D.
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