Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS04750 and LRK54_RS04755 are separated by 70 nucleotidesLRK54_RS04755 and LRK54_RS04760 are separated by 180 nucleotidesLRK54_RS04760 and LRK54_RS04765 are separated by 296 nucleotidesLRK54_RS04765 and LRK54_RS04770 are separated by 128 nucleotides LRK54_RS04750: LRK54_RS04750 - polyhydroxyalkanoate depolymerase, at 1,007,939 to 1,009,192 _RS04750 LRK54_RS04755: LRK54_RS04755 - hypothetical protein, at 1,009,263 to 1,010,348 _RS04755 LRK54_RS04760: LRK54_RS04760 - M1 family metallopeptidase, at 1,010,529 to 1,013,231 _RS04760 LRK54_RS04765: LRK54_RS04765 - LysR substrate-binding domain-containing protein, at 1,013,528 to 1,014,499 _RS04765 LRK54_RS04770: LRK54_RS04770 - rubrerythrin family protein, at 1,014,628 to 1,015,047 _RS04770
Group Condition LRK54_RS04750 LRK54_RS04755 LRK54_RS04760 LRK54_RS04765 LRK54_RS04770
carbon source D-Glucose-6-Phosphate 20 mM -0.4 -0.1 +0.2 -3.1 +0.1
carbon source acetate 20 mM -0.1 -0.2 +0.1 -3.1 +0.1
carbon source D-Glucose-6-Phosphate 20 mM -0.6 +0.1 +0.2 -2.7 +0.1
carbon source acetate 20 mM -0.3 +0.1 +0.1 -2.5 +0.1
carbon source D-Raffinose 20 mM -0.1 -0.5 +0.1 -2.2 +0.1
carbon source a-Cyclodextrin 20 mM -0.4 -0.3 +0.2 -2.0 +0.0
carbon source D-Raffinose 20 mM -0.2 -0.5 +0.1 -1.8 +0.2
carbon source casaminos 2 mg/mL -0.1 -0.2 +0.1 -1.8 -0.0
carbon source a-Cyclodextrin 20 mM -0.4 -0.2 +0.1 -1.5 +0.1
carbon source casaminos 2 mg/mL -0.2 -0.0 +0.0 -1.4 +0.0
stress R2A_PIPES with Metal_ion_mix_sitestressplate 2 x -0.0 -0.7 +0.1 -0.5 -0.4
stress R2A with arsenate 15.625 mM -0.1 -0.7 +0.0 -0.3 -0.0
carbon source L-Glutamic 20 mM -0.1 -0.4 +0.0 -0.7 +0.0
stress R2A with Nickel (II) chloride 0.3125 mM -0.1 -0.8 +0.1 -0.3 +0.0
carbon source D-Glucosamine Hydrochloride 20 mM -0.1 -0.4 +0.1 -0.7 +0.0
carbon source Gly-Glu 20 mM +0.1 -0.4 +0.0 -0.7 +0.0
stress R2A with Zinc chloride 0.625 mM -0.1 -1.0 -0.1 -0.0 +0.2
biofilm assay; planktonic sample Planktonic; Day4; SGW; pH7 -0.2 -0.9 +0.1 +0.0 +0.1
carbon source D-Maltose 20 mM -0.1 +0.3 +0.0 -1.2 +0.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.1 -1.0 -0.1 +0.2 +0.1
biofilm assay; planktonic sample planktonic; Day2; NLDM; Aluminum chloride 1mM +0.1 -0.8 +0.0 -0.3 +0.1
carbon source D-Glucosamine Hydrochloride 20 mM -0.1 +0.3 +0.0 -0.7 +0.0
phage 1C-T2 -0.1 +0.7 -0.0 -0.5 +0.1
stress R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM -0.2 +0.7 -0.4 +0.1 +0.0
stress R2A with chromate 0.0048828125 mM +0.0 +0.6 -0.0 +0.1 -0.3
phage S3-T1 -0.1 +0.8 +0.0 -0.2 -0.0
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.4 +0.9 +0.0 +0.0 +0.0
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors +0.4 +0.4 +0.1 -0.2 +0.0
phage 3C-T2 -0.1 +1.2 +0.1 +0.0 -0.2
stress R2A with bismuth(III) chloride 0.03125 mM -0.2 +1.2 -0.2 +0.7 +0.2
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