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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS04655 and LRK54_RS04660 are separated by 136 nucleotides
LRK54_RS04660 and LRK54_RS04665 are separated by 171 nucleotides
LRK54_RS04665 and LRK54_RS04670 are separated by 10 nucleotides
LRK54_RS04670 and LRK54_RS04675 are separated by 283 nucleotides
LRK54_RS04655: LRK54_RS04655 - peptide deformylase, at 989,555 to 990,094
_RS04655
LRK54_RS04660: LRK54_RS04660 - DUF4197 domain-containing protein, at 990,231 to 991,028
_RS04660
LRK54_RS04665: LRK54_RS04665 - carbon starvation protein A, at 991,200 to 993,275
_RS04665
LRK54_RS04670: LRK54_RS04670 - YbdD/YjiX family protein, at 993,286 to 993,480
_RS04670
LRK54_RS04675: LRK54_RS04675 - PEP-CTERM sorting domain-containing protein, at 993,764 to 994,630
_RS04675
Group
Condition
LRK54
_RS04655
LRK54
_RS04660
LRK54
_RS04665
LRK54
_RS04670
LRK54
_RS04675
carbon source
pyruvate 20 mM
-0.1
+0.1
-1.5
-1.3
+0.0
carbon source
pyruvate 20 mM
-0.1
+0.1
-1.3
-1.3
+0.0
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
-0.3
+0.1
-0.9
-0.9
-0.0
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
-2.2
+0.2
-0.0
+0.3
-0.1
phage
phage 31.1
-1.7
-0.2
+0.1
-0.2
+0.0
stress
R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM
-0.2
-0.2
-0.6
-0.7
-0.0
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
-0.1
-0.2
-0.9
-0.5
-0.0
stress
R2A with nitrite 50 mM
-0.8
-0.1
-0.3
-0.3
-0.1
stress
R2A with Manganese (II) chloride tetrahydrate 3.125 mM
-1.0
-0.1
-0.3
-0.3
-0.0
stress
R2A with Manganese (II) chloride tetrahydrate 6.25 mM
-0.5
-0.1
-0.5
-0.3
-0.1
stress
R2A with nitrate 250 mM
-1.4
-0.1
-0.0
+0.2
-0.0
stress
R2A with arsenate 31.25 mM
-0.8
+0.1
-0.2
-0.5
-0.0
stress
R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM
-0.5
+0.1
-0.6
-0.3
+0.0
stress
R2A with nitrite 25 mM
-0.6
+0.2
-0.3
-0.3
-0.1
stress
R2A with Cobalt chloride 0.15625 mM
-1.0
+0.4
-0.1
-0.1
-0.1
stress
R2A with Ferric chloride 1.5625 mM
+0.5
-0.0
-0.6
-0.6
-0.2
phage
4E-T1
-1.4
+0.1
+0.2
+0.2
+0.0
r2a_control
R2A control
+0.3
-0.1
-0.6
-0.3
-0.2
stress
R2A with ammonium iron(II) sulfate 2.5 mM
+0.3
+0.2
-0.6
-0.4
-0.1
pH
R2A_PIPES pH 4.25
-1.0
+0.4
+0.1
-0.1
+0.2
stress
R2A with Cesium chloride 3.90625 mM
+0.6
-0.1
-0.4
-0.3
-0.2
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
+0.4
+0.2
-0.3
-0.6
-0.0
stress
R2A with bismuth(III) chloride 0.03125 mM
+1.4
+0.0
-0.5
-0.2
-0.5
carbon source
D-Glucose-6-Phosphate 20 mM
-0.1
-0.3
+0.7
+0.6
-0.0
stress
R2A with Aluminum chloride 3.125 mM
-0.3
-0.3
+1.0
+0.7
+0.1
carbon source
acetate 20 mM
-0.0
-0.1
+0.8
+0.7
-0.0
carbon source
D-Raffinose 20 mM
+0.4
-0.1
+0.4
+0.5
+0.1
stress
R2A with Nickel (II) chloride 0.3125 mM
+0.7
+0.3
+0.3
+0.1
+0.1
carbon source
a-Cyclodextrin 20 mM
+0.4
+0.4
+0.7
+0.4
+0.1
carbon source
a-Cyclodextrin 20 mM
+0.8
+0.1
+0.9
+0.8
-0.2
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