Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS04615 and LRK54_RS04620 are separated by 2 nucleotidesLRK54_RS04620 and LRK54_RS04625 are separated by 9 nucleotidesLRK54_RS04625 and LRK54_RS04630 are separated by 189 nucleotidesLRK54_RS04630 and LRK54_RS04635 are separated by 103 nucleotides LRK54_RS04615: LRK54_RS04615 - transcriptional regulator NrdR, at 982,442 to 982,954 _RS04615 LRK54_RS04620: LRK54_RS04620 - CTP synthase, at 982,957 to 983,655 _RS04620 LRK54_RS04625: LRK54_RS04625 - serine hydroxymethyltransferase, at 983,665 to 984,918 _RS04625 LRK54_RS04630: LRK54_RS04630 - energy-dependent translational throttle protein EttA, at 985,108 to 986,775 _RS04630 LRK54_RS04635: LRK54_RS04635 - orotidine-5'-phosphate decarboxylase, at 986,879 to 987,697 _RS04635
Group Condition LRK54_RS04615 LRK54_RS04620 LRK54_RS04625 LRK54_RS04630 LRK54_RS04635
carbon source NAG 20 mM -0.7 -0.1 -4.0 -2.2 N.D.
pH R2A_PIPES pH 4 -1.9 -0.2 -2.2 -2.6 N.D.
carbon source NAG 20 mM -0.5 -0.1 -4.3 -1.7 N.D.
carbon source acetate 20 mM -0.9 -0.3 -3.5 -1.8 N.D.
pH R2A_PIPES pH 4.25 -2.8 -0.2 -1.3 -2.0 N.D.
carbon source D-Glucose 20 mM -0.8 -0.1 -4.4 -0.9 N.D.
stress R2A with Nickel (II) chloride 0.3125 mM -1.2 -0.1 -2.8 -2.0 N.D.
carbon source L-Glutamic 20 mM -0.3 -0.0 -3.7 -2.1 N.D.
carbon source pyruvate 20 mM -0.4 +0.0 -3.6 -2.1 N.D.
carbon source L-Glutamic 20 mM -0.2 -0.1 -3.7 -1.9 N.D.
carbon source pyruvate 20 mM -0.5 -0.2 -3.7 -1.4 N.D.
carbon source D-Trehalose 20 mM -0.4 -0.1 -3.5 -1.8 N.D.
stress R2A with nitrite 25 mM -0.9 -0.0 -3.2 -1.7 N.D.
carbon source D-Glucose-6-Phosphate 20 mM -0.4 -0.1 -3.2 -2.1 N.D.
biofilm assay; planktonic sample planktonic; Day2; NLDM; Aluminum chloride 1mM -2.5 +0.0 -1.0 -2.1 N.D.
stress R2A with nitrate 250 mM -2.4 +0.1 -1.4 -1.9 N.D.
carbon source D-Glucose-6-Phosphate 20 mM -0.7 -0.1 -2.7 -2.0 N.D.
carbon source Gly-Glu 20 mM -1.0 -0.2 -2.1 -2.3 N.D.
pH R2A_PIPES pH 4 -1.4 -0.1 -1.8 -2.3 N.D.
carbon source D-Glucose 20 mM -0.6 -0.1 -4.0 -0.7 N.D.
carbon source D-Raffinose 20 mM -0.2 +0.1 -3.1 -2.2 N.D.
carbon source D-Trehalose 20 mM -0.8 -0.2 -4.2 -0.1 N.D.
stress R2A with nitrite 50 mM -0.8 -0.2 -2.4 -1.8 N.D.
r2a_control R2A control -0.5 -0.0 -1.4 -3.2 N.D.
carbon source Gly-Glu 20 mM -1.0 -0.0 -1.7 -2.3 N.D.
r2a_control R2A control -0.4 +0.1 -1.5 -3.3 N.D.
r2a_control R2A control -0.5 +0.2 -1.2 -3.3 N.D.
stress R2A with m-arsenite 0.078125 mM +0.4 -0.1 -3.7 -1.2 N.D.
stress R2A with m-arsenite 0.078125 mM +0.6 -0.3 -3.5 -0.7 N.D.
stress R2A with Selective_ion_mix_1 1 X +1.2 -0.1 +0.3 +4.1 N.D.
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