Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS04305 and LRK54_RS04310 overlap by 4 nucleotidesLRK54_RS04310 and LRK54_RS04315 are separated by 108 nucleotidesLRK54_RS04315 and LRK54_RS04320 are separated by 5 nucleotidesLRK54_RS04320 and LRK54_RS04325 are separated by 15 nucleotides LRK54_RS04305: LRK54_RS04305 - shikimate kinase, at 910,009 to 910,563 _RS04305 LRK54_RS04310: LRK54_RS04310 - 3-dehydroquinate synthase, at 910,560 to 911,651 _RS04310 LRK54_RS04315: LRK54_RS04315 - WGR domain-containing protein, at 911,760 to 912,020 _RS04315 LRK54_RS04320: LRK54_RS04320 - uroporphyrinogen decarboxylase, at 912,026 to 913,096 _RS04320 LRK54_RS04325: LRK54_RS04325 - DUF3147 family protein, at 913,112 to 913,465 _RS04325
Group Condition LRK54_RS04305 LRK54_RS04310 LRK54_RS04315 LRK54_RS04320 LRK54_RS04325
pH R2A_PIPES pH 4 -3.9 N.D. -0.5 N.D. -0.3
biofilm assay; biofilm sample biofilm; Day2; NLDM; -2.9 N.D. -1.6 N.D. +0.1
pH R2A_PIPES pH 4 -4.3 N.D. +0.0 N.D. +0.1
carbon source NAG 20 mM -3.5 N.D. -0.6 N.D. +0.2
stress R2A with Cadmium chloride hemipentahydrate 0.0390625 mM -2.2 N.D. -1.3 N.D. -0.3
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM -3.1 N.D. -0.5 N.D. -0.0
stress R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM -3.2 N.D. -0.2 N.D. -0.2
carbon source D-Trehalose 20 mM -3.8 N.D. +0.1 N.D. +0.2
stress R2A with ammonium iron(II) sulfate 2.5 mM -3.8 N.D. +0.2 N.D. +0.1
stress R2A with mercury (II) chloride 0.009765625 mM -3.7 N.D. +0.0 N.D. +0.2
r2a_control R2A control -3.7 N.D. +0.3 N.D. +0.0
stress R2A with Magnesium sulfate 3.90625 mM -3.1 N.D. -0.3 N.D. +0.0
stress R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM -3.9 N.D. +0.5 N.D. +0.1
carbon source D-Glucose 20 mM -2.9 N.D. -0.5 N.D. +0.1
r2a_control R2A control -3.4 N.D. +0.2 N.D. -0.1
carbon source NAG 20 mM -3.2 N.D. -0.1 N.D. +0.1
stress R2A with ammonium iron(II) sulfate 2.5 mM -3.6 N.D. +0.3 N.D. +0.1
stress R2A with Chloride 250 mM -3.8 N.D. +0.5 N.D. +0.2
r2a_control R2A control -3.3 N.D. -0.1 N.D. +0.3
stress R2A with Strontium chloride 3.90625 mM -2.7 N.D. -0.6 N.D. +0.3
stress R2A with silver chloride 1 mM -3.1 N.D. +0.1 N.D. +0.2
stress R2A with lithium chloride 15.625 mM -3.2 N.D. -0.1 N.D. +0.5
pH R2A_PIPES pH 4.25 -2.6 N.D. +0.5 N.D. -0.6
r2a_control R2A control -3.2 N.D. +0.3 N.D. +0.3
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM -2.7 N.D. -0.4 N.D. +0.6
r2a_control R2A control -3.4 N.D. +0.5 N.D. +0.4
stress R2A with lithium chloride 15.625 mM -3.2 N.D. +0.6 N.D. +0.3
stress R2A with Cesium chloride 3.90625 mM -2.7 N.D. +0.5 N.D. +0.4
stress R2A with Chloride 250 mM -2.7 N.D. +0.7 N.D. +0.4
carbon source acetate 20 mM -2.5 N.D. +1.0 N.D. +0.0
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