Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS04165 and LRK54_RS04170 overlap by 4 nucleotidesLRK54_RS04170 and LRK54_RS04175 overlap by 8 nucleotidesLRK54_RS04175 and LRK54_RS04180 are separated by 103 nucleotidesLRK54_RS04180 and LRK54_RS04185 are separated by 130 nucleotides LRK54_RS04165: LRK54_RS04165 - chemotaxis protein CheW, at 877,644 to 878,162 _RS04165 LRK54_RS04170: LRK54_RS04170 - chemotaxis protein CheB, at 878,159 to 879,742 _RS04170 LRK54_RS04175: LRK54_RS04175 - Hpt domain-containing protein, at 879,735 to 885,713 _RS04175 LRK54_RS04180: LRK54_RS04180 - methyl-accepting chemotaxis protein, at 885,817 to 887,847 _RS04180 LRK54_RS04185: LRK54_RS04185 - chemotaxis protein CheW, at 887,978 to 888,517 _RS04185
Group Condition LRK54_RS04165 LRK54_RS04170 LRK54_RS04175 LRK54_RS04180 LRK54_RS04185
stress R2A_PIPES with Aluminum chloride 1.125 mM -0.5 -0.4 +0.0 -0.3 -2.6
stress R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM -0.5 -0.2 -0.4 -0.5 -2.1
stress R2A_PIPES with Metal_ion_mix_sitestressplate 2 x +0.5 -0.6 -0.1 -0.2 -3.1
biofilm assay; planktonic sample Planktonic; Day2; SGW; pH7 +0.6 -0.2 +0.2 -0.4 -3.5
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -1.4 -0.1 +1.1 +1.1 -3.5
biofilm assay; planktonic sample Planktonic; Day4; SGW; pH7 +0.7 +0.1 +0.7 -0.6 -3.3
stress R2A with Calcium chloride 125 mM -0.7 +0.3 -1.3 +0.5 -1.1
r2a_control R2A control +0.3 +0.1 +0.0 +0.3 -2.7
stress R2A with Aluminum chloride 3.125 mM +0.2 -0.3 +0.3 +0.1 -2.2
phage 4E-T2 +0.3 -0.6 +0.3 +0.4 -2.0
carbon source D-Glucose 20 mM +0.0 -0.5 +1.5 -0.4 -2.0
carbon source D-Glucose-6-Phosphate 20 mM -0.5 -0.7 +0.8 -0.4 +1.1
carbon source D-Maltose 20 mM +0.2 -0.4 +1.5 -0.2 -0.8
carbon source D-Trehalose 20 mM +0.3 -0.6 +1.8 -0.3 -0.6
carbon source D-Raffinose 20 mM +0.1 -0.7 +1.0 -0.3 +1.0
pH R2A_PIPES pH 4 -0.6 +0.0 +1.7 +0.2 +0.7
stress R2A with Nickel (II) chloride 0.3125 mM -0.6 +0.2 +0.9 +0.4 +1.1
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors -0.1 -0.4 +1.7 +0.7 +0.5
carbon source acetate 20 mM +0.3 -0.3 +2.7 -0.2 +0.3
biofilm assay; biofilm sample biofilm; Day2; NLDM; +0.6 +0.4 +0.5 +0.7 +1.0
carbon source acetate 20 mM +0.5 -0.4 +2.6 -0.1 +0.6
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.4 +0.5 +1.3 +1.2 +0.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM +0.9 +0.2 +1.2 +0.5 +0.8
anaerobic Anaerobic, acetate donor; nitrate electron acceptor +0.8 -0.1 +1.3 +0.1 +1.7
anaerobic Anaerobic, acetate donor; nitrate electron acceptor +0.3 -0.3 +1.4 +0.1 +2.3
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors -0.9 +0.1 +1.8 +0.9 +2.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.7 +0.4 +1.1 +1.1 +1.3
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.7 +0.3 +0.4 +1.5 +2.1
carbon source a-Cyclodextrin 20 mM +0.1 -0.2 +1.5 +0.9 +3.3
carbon source a-Cyclodextrin 20 mM -0.5 -0.1 +1.4 +1.2 +4.0
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