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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS04125 and LRK54_RS04130 overlap by 4 nucleotides
LRK54_RS04130 and LRK54_RS04135 overlap by 4 nucleotides
LRK54_RS04135 and LRK54_RS04140 are separated by 23 nucleotides
LRK54_RS04140 and LRK54_RS04145 are separated by 16 nucleotides
LRK54_RS04125: LRK54_RS04125 - nucleoside triphosphate pyrophosphohydrolase, at 871,169 to 871,981
_RS04125
LRK54_RS04130: LRK54_RS04130 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 871,978 to 872,799
_RS04130
LRK54_RS04135: LRK54_RS04135 - ADP compounds hydrolase NudE, at 872,796 to 873,353
_RS04135
LRK54_RS04140: LRK54_RS04140 - inositol-phosphate phosphatase, at 873,377 to 874,153
_RS04140
LRK54_RS04145: LRK54_RS04145 - type II secretion system protein N, at 874,170 to 874,958
_RS04145
Group
Condition
LRK54
_RS04125
LRK54
_RS04130
LRK54
_RS04135
LRK54
_RS04140
LRK54
_RS04145
carbon source
D-Trehalose 20 mM
-0.0
-0.7
-0.3
-3.9
N.D.
carbon source
NAG 20 mM
+0.1
-1.1
-0.1
-3.7
N.D.
carbon source
NAG 20 mM
+0.1
-0.7
-0.1
-3.9
N.D.
stress
R2A with arsenate 15.625 mM
-0.0
-1.4
-0.1
-3.1
N.D.
stress
R2A with m-arsenite 0.078125 mM
+0.2
-1.2
-0.8
-2.7
N.D.
stress
R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM
+0.1
-1.0
-0.2
-3.1
N.D.
stress
R2A with nitrite 25 mM
+0.2
-1.1
-0.2
-3.2
N.D.
carbon source
D-Maltose 20 mM
-0.1
-0.5
+0.0
-3.7
N.D.
stress
R2A with Cadmium chloride hemipentahydrate 0.0390625 mM
-0.2
-0.8
-0.1
-3.2
N.D.
carbon source
L-Glutamic 20 mM
-0.0
-0.8
-0.0
-3.4
N.D.
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
-0.1
-0.9
-0.3
-2.9
N.D.
carbon source
D-Maltose 20 mM
-0.0
-0.5
-0.1
-3.5
N.D.
stress
R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM
+0.0
-0.9
-0.1
-3.0
N.D.
carbon source
pyruvate 20 mM
-0.0
-0.3
-0.2
-3.5
N.D.
stress
R2A with arsenate 15.625 mM
-0.0
-0.9
-0.1
-2.8
N.D.
carbon source
L-Glutamic 20 mM
-0.1
-0.9
+0.1
-2.9
N.D.
carbon source
D-Raffinose 20 mM
-0.1
-0.5
+0.1
-3.3
N.D.
carbon source
D-Glucose 20 mM
-0.0
-0.4
-0.0
-3.3
N.D.
carbon source
pyruvate 20 mM
+0.1
-0.4
+0.1
-3.5
N.D.
stress
R2A with m-arsenite 0.078125 mM
+0.1
-0.9
-0.4
-2.5
N.D.
carbon source
D-Glucose 20 mM
-0.0
-0.6
-0.1
-2.9
N.D.
carbon source
D-Trehalose 20 mM
-0.2
-0.5
-0.1
-2.7
N.D.
stress
R2A with nitrite 50 mM
+0.1
-0.7
-0.1
-2.8
N.D.
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
+0.2
-0.4
-0.4
-2.8
N.D.
carbon source
D-Glucosamine Hydrochloride 20 mM
+0.1
-0.3
+0.0
-3.2
N.D.
carbon source
a-Cyclodextrin 20 mM
+0.0
-1.4
+0.6
-2.2
N.D.
carbon source
D-Glucose-6-Phosphate 20 mM
+0.3
-0.3
+0.3
-2.7
N.D.
carbon source
a-Cyclodextrin 20 mM
-0.2
-1.2
+0.7
-1.7
N.D.
carbon source
Gly-Glu 20 mM
-0.2
-1.2
-0.3
+2.3
N.D.
carbon source
Gly-Glu 20 mM
-0.2
-0.9
-0.2
+2.6
N.D.
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