Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS03950 and LRK54_RS03955 are separated by 148 nucleotidesLRK54_RS03955 and LRK54_RS03960 are separated by 14 nucleotidesLRK54_RS03960 and LRK54_RS03965 overlap by 4 nucleotidesLRK54_RS03965 and LRK54_RS03970 are separated by 136 nucleotides LRK54_RS03950: LRK54_RS03950 - type II secretion system F family protein, at 833,075 to 834,346 _RS03950 LRK54_RS03955: LRK54_RS03955 - endonuclease domain-containing protein, at 834,495 to 834,893 _RS03955 LRK54_RS03960: LRK54_RS03960 - A24 family peptidase, at 834,908 to 835,765 _RS03960 LRK54_RS03965: LRK54_RS03965 - dephospho-CoA kinase, at 835,762 to 836,382 _RS03965 LRK54_RS03970: LRK54_RS03970 - NUDIX domain-containing protein, at 836,519 to 836,935 _RS03970
Group Condition LRK54_RS03950 LRK54_RS03955 LRK54_RS03960 LRK54_RS03965 LRK54_RS03970
stress R2A with Cobalt chloride 0.15625 mM -0.2 -0.1 -1.8 N.D. +0.4
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.9 -0.8 +0.6 N.D. -0.9
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM +0.7 -0.6 +0.8 N.D. -0.3
anaerobic Anaerobic, acetate donor; nitrate electron acceptor +1.1 -0.1 +0.5 N.D. -0.6
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +1.2 -0.7 +1.0 N.D. +0.3
carbon source D-Glucose (C) and 20 AA mix; 20C +0.9 -0.0 +1.1 N.D. -0.3
carbon source D-Maltose 20 mM +1.3 -0.1 +0.7 N.D. +0.2
pH R2A_PIPES pH 4 +1.2 +0.2 +1.0 N.D. -0.2
carbon source D-Glucose (C); 30C +1.2 +0.2 +0.8 N.D. -0.1
biofilm assay; planktonic sample planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM +1.0 +0.3 +0.9 N.D. +0.0
carbon source Gly-Glu 20 mM +1.8 -0.1 +0.7 N.D. -0.1
pH R2A_PIPES pH 4 +1.2 -0.0 +1.0 N.D. +0.1
carbon source D-Glucose 20 mM +1.4 +0.0 +0.9 N.D. +0.1
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM +1.0 +0.2 +1.2 N.D. +0.0
carbon source a-Cyclodextrin 20 mM +0.9 -0.0 +1.3 N.D. +0.2
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM +1.4 -0.5 +1.5 N.D. -0.1
stress R2A with Manganese (II) chloride tetrahydrate 6.25 mM +0.8 +0.3 +1.3 N.D. +0.1
stress R2A with Manganese (II) chloride tetrahydrate 6.25 mM +0.8 +0.1 +1.8 N.D. -0.1
stress R2A with Manganese (II) chloride tetrahydrate 2.5 mM +1.0 +0.0 +1.7 N.D. -0.2
anaerobic Anaerobic, acetate donor; nitrate electron acceptor +2.0 +0.3 +0.7 N.D. -0.3
carbon source D-Trehalose 20 mM +1.8 -0.0 +0.8 N.D. +0.2
stress R2A with Aluminum chloride 3.125 mM +1.6 +0.0 +1.5 N.D. -0.1
stress R2A with Ferric chloride 1.5625 mM +2.1 -0.1 +1.0 N.D. +0.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.8 +0.4 +1.6 N.D. +0.4
carbon source acetate 20 mM +1.9 -0.0 +1.7 N.D. -0.3
stress R2A with ammonium iron(II) sulfate 2.5 mM +2.2 +0.0 +1.5 N.D. -0.1
stress R2A with Manganese (II) chloride tetrahydrate 2.5 mM +1.5 +0.1 +2.3 N.D. -0.0
carbon source acetate 20 mM +2.2 -0.0 +1.9 N.D. +0.0
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors +3.0 -0.1 +2.3 N.D. +0.0
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors +2.9 +0.3 +2.9 N.D. +0.0
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