Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS03935 and LRK54_RS03940 overlap by 4 nucleotidesLRK54_RS03940 and LRK54_RS03945 are separated by 633 nucleotidesLRK54_RS03945 and LRK54_RS03950 are separated by 142 nucleotidesLRK54_RS03950 and LRK54_RS03955 are separated by 148 nucleotides LRK54_RS03935: LRK54_RS03935 - type II toxin-antitoxin system VapC family toxin, at 829,940 to 830,335 _RS03935 LRK54_RS03940: LRK54_RS03940 - AbrB/MazE/SpoVT family DNA-binding domain-containing protein, at 830,332 to 830,574 _RS03940 LRK54_RS03945: LRK54_RS03945 - type IV-A pilus assembly ATPase PilB, at 831,208 to 832,932 _RS03945 LRK54_RS03950: LRK54_RS03950 - type II secretion system F family protein, at 833,075 to 834,346 _RS03950 LRK54_RS03955: LRK54_RS03955 - endonuclease domain-containing protein, at 834,495 to 834,893 _RS03955
Group Condition LRK54_RS03935 LRK54_RS03940 LRK54_RS03945 LRK54_RS03950 LRK54_RS03955
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.4 N.D. +1.0 +0.9 -0.8
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.4 N.D. +1.0 +1.2 -0.7
anaerobic Anaerobic, acetate donor; nitrate electron acceptor -0.9 N.D. +1.0 +1.1 -0.1
stress R2A with silver chloride 1 mM -0.7 N.D. +1.1 +1.0 -0.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.8 N.D. +1.0 +0.8 +0.4
stress R2A with lead(II) chloride 0.625 mM -0.6 N.D. +0.9 +1.0 +0.1
stress R2A with Magnesium sulfate 3.90625 mM -0.5 N.D. +1.1 +1.1 -0.1
r2a_control R2A control -0.5 N.D. +1.0 +1.1 +0.1
stress R2A with Cesium chloride 3.90625 mM -0.6 N.D. +0.9 +1.1 +0.2
stress R2A with mercury (II) chloride 0.009765625 mM -0.3 N.D. +1.1 +1.1 +0.2
stress R2A with Uranyl acetate 2.5 mM -0.4 N.D. +1.2 +1.2 +0.2
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.2 N.D. +1.2 +1.1 +0.0
carbon source Gly-Glu 20 mM -0.3 N.D. +1.3 +1.3 -0.1
stress R2A with beryllium sulfate tetrahydrate 1.953125 mM -0.2 N.D. +1.2 +1.3 +0.1
pH R2A_PIPES pH 4 -0.1 N.D. +1.3 +1.2 -0.0
carbon source D-Maltose 20 mM -0.2 N.D. +1.3 +1.3 -0.1
carbon source D-Glucose 20 mM -0.1 N.D. +1.3 +1.4 +0.0
carbon source Gly-Glu 20 mM -0.6 N.D. +1.7 +1.8 -0.1
stress R2A with Manganese (II) chloride tetrahydrate 2.5 mM -0.1 N.D. +1.4 +1.5 +0.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM +0.4 N.D. +1.5 +1.4 -0.5
stress R2A with Aluminum chloride 3.125 mM -0.2 N.D. +1.5 +1.6 +0.0
pH R2A_PIPES pH 4 +0.1 N.D. +1.4 +1.2 +0.2
carbon source D-Trehalose 20 mM -0.2 N.D. +1.7 +1.8 -0.0
stress R2A with Ferric chloride 1.5625 mM -0.4 N.D. +2.0 +2.1 -0.1
carbon source acetate 20 mM -0.2 N.D. +2.0 +1.9 -0.0
anaerobic Anaerobic, acetate donor; nitrate electron acceptor -0.0 N.D. +1.7 +2.0 +0.3
carbon source acetate 20 mM -0.3 N.D. +2.2 +2.2 -0.0
stress R2A with ammonium iron(II) sulfate 2.5 mM -0.3 N.D. +2.2 +2.2 +0.0
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors -0.2 N.D. +2.8 +3.0 -0.1
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors -0.3 N.D. +2.8 +2.9 +0.3
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