Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS03845 and LRK54_RS03850 are separated by 237 nucleotidesLRK54_RS03850 and LRK54_RS03855 are separated by 124 nucleotidesLRK54_RS03855 and LRK54_RS03860 are separated by 61 nucleotidesLRK54_RS03860 and LRK54_RS03865 are separated by 47 nucleotides LRK54_RS03845: LRK54_RS03845 - DUF3106 domain-containing protein, at 808,774 to 809,301 _RS03845 LRK54_RS03850: LRK54_RS03850 - NAD(P) transhydrogenase subunit alpha, at 809,539 to 810,642 _RS03850 LRK54_RS03855: LRK54_RS03855 - cytidine deaminase, at 810,767 to 811,183 _RS03855 LRK54_RS03860: LRK54_RS03860 - nitroreductase, at 811,245 to 811,814 _RS03860 LRK54_RS03865: LRK54_RS03865 - exodeoxyribonuclease IX, at 811,862 to 812,716 _RS03865
Group Condition LRK54_RS03845 LRK54_RS03850 LRK54_RS03855 LRK54_RS03860 LRK54_RS03865
anaerobic Anaerobic, acetate donor; nitrate electron acceptor N.D. -0.7 -0.6 -0.4 -0.9
phage 4E-T1 N.D. -0.4 -0.3 -0.6 -1.0
phage 4E-T2 N.D. +0.1 -0.5 -0.4 -0.6
stress R2A with chromate 0.0048828125 mM N.D. -0.4 -0.6 -0.2 -0.2
phage 1E-T2 N.D. +0.1 -0.1 -0.5 -0.5
phage S3-T1 N.D. +0.1 -0.2 -0.2 -0.6
stress R2A with chromate 0.0048828125 mM N.D. -0.3 -0.1 -0.6 +0.2
no stress control no stress control N.D. -0.1 +0.3 -0.6 -0.2
carbon source pyruvate 20 mM N.D. -0.6 -0.1 +0.3 -0.0
stress R2A with Selective_ion_mix_1 1 X N.D. -0.2 -0.3 -0.4 +0.4
stress R2A with Cobalt chloride 0.15625 mM N.D. +0.1 -0.2 -0.5 +0.2
pH R2A_PIPES pH 4.25 N.D. -0.0 +0.3 -0.5 -0.2
carbon source pyruvate 20 mM N.D. -0.5 -0.1 +0.3 -0.0
stress R2A_PIPES with Aluminum chloride 1.125 mM N.D. +0.2 +0.0 -0.7 +0.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM N.D. -0.7 +0.3 +0.4 -0.3
carbon source a-Cyclodextrin 20 mM N.D. -0.1 -0.2 +0.5 -0.4
anaerobic Anaerobic, acetate donor; nitrate electron acceptor N.D. -0.3 -0.2 +0.4 -0.2
carbon source acetate 20 mM N.D. -0.1 +0.1 +0.6 -0.6
carbon source Gly-Glu 20 mM N.D. -0.4 -0.1 +0.4 +0.2
biofilm assay; planktonic sample Planktonic; Day2; SGW; pH7 N.D. +0.0 +0.4 +0.2 -0.4
stress R2A with bismuth(III) chloride 0.03125 mM N.D. +0.1 -0.4 +1.1 -0.5
carbon source Gly-Glu 20 mM N.D. -0.3 +0.2 +0.5 -0.1
stress R2A with m-arsenite 0.078125 mM N.D. -0.2 -0.2 +0.9 -0.2
phage 3E-T2 N.D. +0.0 +0.1 +0.6 -0.3
carbon source acetate 20 mM N.D. -0.2 -0.1 +0.7 +0.1
stress R2A with nitrite 25 mM N.D. -0.1 +0.1 +0.5 +0.5
stress R2A with m-arsenite 0.078125 mM N.D. +0.0 +0.1 +1.0 -0.2
phage 2F-T1 N.D. -0.1 +0.3 +0.5 +0.2
stress R2A with nitrite 25 mM N.D. +0.2 -0.1 +0.8 +0.2
stress R2A with nitrite 50 mM N.D. +0.1 +0.2 +0.7 +0.3
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