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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS03410 and LRK54_RS03415 overlap by 23 nucleotides
LRK54_RS03415 and LRK54_RS03420 are separated by 111 nucleotides
LRK54_RS03420 and LRK54_RS03425 overlap by 4 nucleotides
LRK54_RS03425 and LRK54_RS03430 are separated by 98 nucleotides
LRK54_RS03410: LRK54_RS03410 - ATP-binding protein, at 737,338 to 738,057
_RS03410
LRK54_RS03415: LRK54_RS03415 - mismatch-specific DNA-glycosylase, at 738,035 to 738,562
_RS03415
LRK54_RS03420: LRK54_RS03420 - cytochrome c, at 738,674 to 739,963
_RS03420
LRK54_RS03425: LRK54_RS03425 - c-type cytochrome, at 739,960 to 740,733
_RS03425
LRK54_RS03430: LRK54_RS03430 - amidase, at 740,832 to 742,445
_RS03430
Group
Condition
LRK54
_RS03410
LRK54
_RS03415
LRK54
_RS03420
LRK54
_RS03425
LRK54
_RS03430
phage
4E-T1
-0.2
-0.4
-0.3
-0.6
-0.7
phage
4E-T2
-0.1
-0.0
-0.6
-0.7
-0.4
no phage control
No phage control
-0.3
-0.2
-0.5
-0.3
-0.2
phage
S3-T1
-0.4
-0.0
-0.4
-0.2
-0.4
phage
4B-T1
-0.5
-0.2
-0.2
-0.1
-0.2
phage
1B-T1
-0.3
-0.0
-0.2
-0.3
-0.3
carbon source
a-Cyclodextrin 20 mM
-0.5
+0.2
-0.2
-0.3
-0.2
phage
3E-T2
-0.2
+0.1
-0.3
-0.2
-0.2
stress
R2A with Aluminum chloride 3.125 mM
-0.3
-0.3
-0.1
-0.3
+0.2
stress
R2A with Nickel (II) chloride 0.3125 mM
-0.3
+0.5
-0.0
-0.2
-0.3
stress
R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
-0.4
-0.4
+0.1
-0.2
+0.6
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
-0.7
-0.1
+0.3
+0.1
+0.1
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
-0.5
+0.1
-0.1
-0.0
+0.3
phage
4B-T2
-0.1
+0.3
-0.1
-0.3
+0.0
phage
2A-T2
-0.2
+0.3
-0.1
-0.2
+0.2
phage
1A-T2
+0.3
+0.3
-0.3
-0.0
-0.1
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
-0.3
-0.0
+0.2
+0.1
+0.3
stress
R2A with Nickel (II) chloride 0.3125 mM
-0.4
+0.0
+0.3
+0.2
+0.2
no stress control
no stress control
+0.3
+0.3
-0.0
+0.3
+0.1
stress
R2A with Cesium chloride 3.90625 mM
+0.1
+0.4
+0.1
+0.2
+0.2
stress
R2A with Manganese (II) chloride tetrahydrate 6.25 mM
+0.2
+0.3
+0.2
+0.1
+0.1
stress
R2A with arsenate 31.25 mM
+0.1
+0.5
+0.1
+0.2
+0.1
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
+0.3
+0.4
+0.1
+0.2
-0.0
stress
R2A with Selective_ion_mix_1 1 X
+0.1
+0.5
-0.1
+0.3
+0.3
stress
R2A with sodium bromide 250 mM
+0.0
+0.3
+0.2
+0.3
+0.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.5
+0.3
+0.0
-0.1
+0.4
stress
R2A with silver chloride 1 mM
-0.0
+0.2
+0.3
+0.3
+0.3
stress
R2A with Chloride 250 mM
+0.1
+0.5
+0.2
+0.2
+0.3
stress
R2A with Chloride 250 mM
+0.2
+0.4
+0.1
+0.3
+0.3
stress
R2A with bismuth(III) chloride 0.03125 mM
+1.0
+0.9
+0.2
+0.5
+0.3
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