Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS03410 and LRK54_RS03415 overlap by 23 nucleotidesLRK54_RS03415 and LRK54_RS03420 are separated by 111 nucleotidesLRK54_RS03420 and LRK54_RS03425 overlap by 4 nucleotidesLRK54_RS03425 and LRK54_RS03430 are separated by 98 nucleotides LRK54_RS03410: LRK54_RS03410 - ATP-binding protein, at 737,338 to 738,057 _RS03410 LRK54_RS03415: LRK54_RS03415 - mismatch-specific DNA-glycosylase, at 738,035 to 738,562 _RS03415 LRK54_RS03420: LRK54_RS03420 - cytochrome c, at 738,674 to 739,963 _RS03420 LRK54_RS03425: LRK54_RS03425 - c-type cytochrome, at 739,960 to 740,733 _RS03425 LRK54_RS03430: LRK54_RS03430 - amidase, at 740,832 to 742,445 _RS03430
Group Condition LRK54_RS03410 LRK54_RS03415 LRK54_RS03420 LRK54_RS03425 LRK54_RS03430
phage 4E-T1 -0.2 -0.4 -0.3 -0.6 -0.7
phage 4E-T2 -0.1 -0.0 -0.6 -0.7 -0.4
no phage control No phage control -0.3 -0.2 -0.5 -0.3 -0.2
phage S3-T1 -0.4 -0.0 -0.4 -0.2 -0.4
phage 4B-T1 -0.5 -0.2 -0.2 -0.1 -0.2
phage 1B-T1 -0.3 -0.0 -0.2 -0.3 -0.3
carbon source a-Cyclodextrin 20 mM -0.5 +0.2 -0.2 -0.3 -0.2
phage 3E-T2 -0.2 +0.1 -0.3 -0.2 -0.2
stress R2A with Aluminum chloride 3.125 mM -0.3 -0.3 -0.1 -0.3 +0.2
stress R2A with Nickel (II) chloride 0.3125 mM -0.3 +0.5 -0.0 -0.2 -0.3
stress R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM -0.4 -0.4 +0.1 -0.2 +0.6
stress R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM -0.7 -0.1 +0.3 +0.1 +0.1
biofilm assay; planktonic sample Planktonic; Day4; SGW; pH7 -0.5 +0.1 -0.1 -0.0 +0.3
phage 4B-T2 -0.1 +0.3 -0.1 -0.3 +0.0
phage 2A-T2 -0.2 +0.3 -0.1 -0.2 +0.2
phage 1A-T2 +0.3 +0.3 -0.3 -0.0 -0.1
stress R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM -0.3 -0.0 +0.2 +0.1 +0.3
stress R2A with Nickel (II) chloride 0.3125 mM -0.4 +0.0 +0.3 +0.2 +0.2
no stress control no stress control +0.3 +0.3 -0.0 +0.3 +0.1
stress R2A with Cesium chloride 3.90625 mM +0.1 +0.4 +0.1 +0.2 +0.2
stress R2A with Manganese (II) chloride tetrahydrate 6.25 mM +0.2 +0.3 +0.2 +0.1 +0.1
stress R2A with arsenate 31.25 mM +0.1 +0.5 +0.1 +0.2 +0.1
stress R2A_PIPES with Metal_ion_mix_sitestressplate 2 x +0.3 +0.4 +0.1 +0.2 -0.0
stress R2A with Selective_ion_mix_1 1 X +0.1 +0.5 -0.1 +0.3 +0.3
stress R2A with sodium bromide 250 mM +0.0 +0.3 +0.2 +0.3 +0.2
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM +0.5 +0.3 +0.0 -0.1 +0.4
stress R2A with silver chloride 1 mM -0.0 +0.2 +0.3 +0.3 +0.3
stress R2A with Chloride 250 mM +0.1 +0.5 +0.2 +0.2 +0.3
stress R2A with Chloride 250 mM +0.2 +0.4 +0.1 +0.3 +0.3
stress R2A with bismuth(III) chloride 0.03125 mM +1.0 +0.9 +0.2 +0.5 +0.3
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