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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS03280 and LRK54_RS03285 overlap by 4 nucleotides
LRK54_RS03285 and LRK54_RS03290 are separated by 36 nucleotides
LRK54_RS03290 and LRK54_RS03295 are separated by 192 nucleotides
LRK54_RS03295 and LRK54_RS03300 are separated by 131 nucleotides
LRK54_RS03280: LRK54_RS03280 - phosphatidate cytidylyltransferase, at 705,218 to 706,042
_RS03280
LRK54_RS03285: LRK54_RS03285 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 706,039 to 707,214
_RS03285
LRK54_RS03290: LRK54_RS03290 - RIP metalloprotease RseP, at 707,251 to 708,597
_RS03290
LRK54_RS03295: LRK54_RS03295 - outer membrane protein assembly factor BamA, at 708,790 to 711,210
_RS03295
LRK54_RS03300: LRK54_RS03300 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 711,342 to 712,370
_RS03300
Group
Condition
LRK54
_RS03280
LRK54
_RS03285
LRK54
_RS03290
LRK54
_RS03295
LRK54
_RS03300
biofilm assay; planktonic sample
planktonic; Day2; NLDM;
N.D.
N.D.
-3.7
N.D.
N.D.
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
N.D.
N.D.
-3.7
N.D.
N.D.
biofilm assay; planktonic sample
planktonic; Day2; NLDM;
N.D.
N.D.
-3.6
N.D.
N.D.
biofilm assay; planktonic sample
planktonic; Day2; NLDM;
N.D.
N.D.
-3.6
N.D.
N.D.
biofilm assay; biofilm sample
biofilm; Day1; NLDM;
N.D.
N.D.
-3.6
N.D.
N.D.
biofilm assay; planktonic sample
planktonic; Day1; NLDM;
N.D.
N.D.
-3.4
N.D.
N.D.
biofilm assay; biofilm sample
biofilm; Day1; NLDM;
N.D.
N.D.
-3.4
N.D.
N.D.
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
N.D.
N.D.
-3.4
N.D.
N.D.
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Aluminum chloride 1mM
N.D.
N.D.
-3.4
N.D.
N.D.
biofilm assay; biofilm sample
biofilm; Day2; NLDM;
N.D.
N.D.
-3.4
N.D.
N.D.
biofilm assay; biofilm sample
biofilm; Day1; NLDM;
N.D.
N.D.
-3.3
N.D.
N.D.
biofilm assay; biofilm sample
biofilm; Day2; NLDM;
N.D.
N.D.
-3.3
N.D.
N.D.
r2a_control
R2A control
N.D.
N.D.
-3.3
N.D.
N.D.
r2a_control
R2A control
N.D.
N.D.
-3.2
N.D.
N.D.
r2a_control
R2A control
N.D.
N.D.
-3.2
N.D.
N.D.
biofilm assay; planktonic sample
planktonic; Day1; NLDM;
N.D.
N.D.
-3.2
N.D.
N.D.
stress
R2A with Manganese (II) chloride tetrahydrate 0.3125 mM
N.D.
N.D.
-3.2
N.D.
N.D.
r2a_control
R2A control
N.D.
N.D.
-3.2
N.D.
N.D.
stress
R2A with Aluminum chloride 1.5625 mM
N.D.
N.D.
-3.2
N.D.
N.D.
r2a_control
R2A control
N.D.
N.D.
-3.2
N.D.
N.D.
r2a_control
R2A control
N.D.
N.D.
-3.2
N.D.
N.D.
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
N.D.
N.D.
-3.2
N.D.
N.D.
stress
R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM
N.D.
N.D.
-3.1
N.D.
N.D.
r2a_control
R2A control
N.D.
N.D.
-3.1
N.D.
N.D.
r2a_control
R2A control
N.D.
N.D.
-3.1
N.D.
N.D.
r2a_control
R2A control
N.D.
N.D.
-3.1
N.D.
N.D.
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Aluminum chloride 1mM
N.D.
N.D.
-3.1
N.D.
N.D.
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Aluminum chloride 1mM
N.D.
N.D.
-3.1
N.D.
N.D.
r2a_control
R2A control
N.D.
N.D.
-3.1
N.D.
N.D.
r2a_control
R2A control
N.D.
N.D.
-3.1
N.D.
N.D.
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