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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS03065 and LRK54_RS03070 are separated by 152 nucleotides
LRK54_RS03070 and LRK54_RS03075 are separated by 1 nucleotides
LRK54_RS03075 and LRK54_RS03080 are separated by 74 nucleotides
LRK54_RS03080 and LRK54_RS03085 are separated by 153 nucleotides
LRK54_RS03065: LRK54_RS03065 - M13 family metallopeptidase, at 659,424 to 661,469
_RS03065
LRK54_RS03070: LRK54_RS03070 - 2-dehydropantoate 2-reductase, at 661,622 to 662,542
_RS03070
LRK54_RS03075: LRK54_RS03075 - acyltransferase, at 662,544 to 663,458
_RS03075
LRK54_RS03080: LRK54_RS03080 - cysteine desulfurase, at 663,533 to 664,777
_RS03080
LRK54_RS03085: LRK54_RS03085 - Fe-S cluster assembly protein SufD, at 664,931 to 666,250
_RS03085
Group
Condition
LRK54
_RS03065
LRK54
_RS03070
LRK54
_RS03075
LRK54
_RS03080
LRK54
_RS03085
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-0.2
-0.4
-1.0
N.D.
N.D.
phage
4B-T1
-0.2
-0.2
-0.8
N.D.
N.D.
biofilm assay; biofilm sample
biofilm; Day2; NLDM;
-0.0
-0.7
-0.3
N.D.
N.D.
biofilm assay; planktonic sample
planktonic; Day1; NLDM;
-0.1
-0.4
-0.6
N.D.
N.D.
carbon source
Gly-Glu 20 mM
-0.1
-0.0
-0.8
N.D.
N.D.
phage
S3-T2
-0.2
+0.2
-0.6
N.D.
N.D.
phage
2A-T1
-0.2
+0.3
-0.6
N.D.
N.D.
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.2
+0.4
-0.7
N.D.
N.D.
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
-0.0
+0.5
-0.9
N.D.
N.D.
stress
R2A_PIPES with Cadmium chloride 16 uM
-0.1
+0.2
-0.5
N.D.
N.D.
stress
R2A_PIPES with Nickel (II) chloride 424 uM
-0.1
+0.4
-0.6
N.D.
N.D.
phage
2A-T2
-0.0
+0.4
-0.5
N.D.
N.D.
stress
R2A with Selective_ion_mix_1 1 X
-0.2
-0.4
+0.4
N.D.
N.D.
stress
R2A with chromate 0.0048828125 mM
+0.3
-0.5
+0.2
N.D.
N.D.
biofilm assay; planktonic sample
planktonic; Day2; NLDM;
+0.1
-0.4
+0.4
N.D.
N.D.
pH
R2A_PIPES pH 4
-0.0
-0.3
+0.5
N.D.
N.D.
stress
R2A with Cobalt chloride 0.15625 mM
+0.1
-0.4
+0.5
N.D.
N.D.
pH
R2A pH5
+0.2
-0.1
+0.5
N.D.
N.D.
pH
R2A pH5
+0.3
-0.1
+0.4
N.D.
N.D.
r2a_control
R2A control
+0.3
+0.3
+0.3
N.D.
N.D.
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
+0.2
-0.1
+0.7
N.D.
N.D.
r2a_control
R2A control
+0.3
+0.3
+0.3
N.D.
N.D.
stress
R2A with Manganese (II) chloride tetrahydrate 6.25 mM
+0.1
+0.3
+0.6
N.D.
N.D.
stress
R2A with beryllium sulfate tetrahydrate 1.953125 mM
+0.3
+0.3
+0.4
N.D.
N.D.
stress
R2A with Manganese (II) chloride tetrahydrate 6.25 mM
+0.3
+0.1
+0.7
N.D.
N.D.
stress
R2A with arsenate 31.25 mM
+0.3
+0.3
+0.5
N.D.
N.D.
stress
R2A with mercury (II) chloride 0.009765625 mM
+0.3
+0.5
+0.3
N.D.
N.D.
stress
R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM
+0.2
+0.4
+0.6
N.D.
N.D.
stress
R2A with bismuth(III) chloride 0.03125 mM
+0.3
+0.6
+0.4
N.D.
N.D.
r2a_control
R2A control
+0.4
+0.3
+0.6
N.D.
N.D.
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