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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS02865 and LRK54_RS02870 are separated by 178 nucleotides
LRK54_RS02870 and LRK54_RS02875 overlap by 4 nucleotides
LRK54_RS02875 and LRK54_RS02880 are separated by 118 nucleotides
LRK54_RS02880 and LRK54_RS02885 are separated by 234 nucleotides
LRK54_RS02865: LRK54_RS02865 - type II toxin-antitoxin system HicA family toxin, at 613,844 to 614,020
_RS02865
LRK54_RS02870: LRK54_RS02870 - DUF502 domain-containing protein, at 614,199 to 614,876
_RS02870
LRK54_RS02875: LRK54_RS02875 - M14 family metallopeptidase, at 614,873 to 616,705
_RS02875
LRK54_RS02880: LRK54_RS02880 - M13 family peptidase, at 616,824 to 618,947
_RS02880
LRK54_RS02885: LRK54_RS02885 - RNA polymerase-associated protein RapA, at 619,182 to 622,022
_RS02885
Group
Condition
LRK54
_RS02865
LRK54
_RS02870
LRK54
_RS02875
LRK54
_RS02880
LRK54
_RS02885
stress
R2A with Calcium chloride 250 mM
-0.1
-1.2
+0.1
-0.5
-1.3
stress
R2A with lead(II) chloride 0.625 mM
-1.1
-1.1
-0.0
-0.2
-0.6
stress
R2A with copper (II) chloride 0.3125 mM
-1.4
-1.4
-0.1
+0.1
-0.0
stress
R2A with Other_metal_mix 1 X
-1.9
-1.0
-0.0
+0.2
-0.1
stress
R2A with Manganese (II) chloride tetrahydrate 6.25 mM
-0.8
-0.6
-0.1
-0.7
-0.4
stress
R2A with Aluminum chloride 3.125 mM
-0.6
-1.6
+0.0
+0.3
-0.9
r2a_control
R2A control
-1.2
-1.5
-0.0
+0.2
-0.0
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
-1.5
-0.7
-0.3
+0.1
-0.1
stress
R2A with m-arsenite 0.078125 mM
-1.6
-1.6
+0.2
+0.4
+0.1
r2a_control
R2A control
-0.7
-1.8
-0.0
-0.0
+0.0
stress
R2A with Selective_ion_mix_1 1 X
-1.9
-0.6
-0.1
-0.1
+0.2
carbon source
a-Cyclodextrin 20 mM
-1.3
-0.6
+0.2
+0.1
-0.9
biofilm assay; biofilm sample
biofilm; Day2; NLDM;
-1.8
-0.7
+0.3
+0.2
-0.3
stress
R2A with arsenate 31.25 mM
-1.9
-0.6
+0.1
+0.1
+0.1
pH
R2A pH6
-1.1
-1.4
+0.1
+0.1
+0.1
stress
R2A with nitrate 125 mM
-1.3
-1.3
+0.2
+0.1
+0.3
phage
3E-T1
-1.9
+0.3
-0.1
+0.1
-0.3
stress
R2A with silver chloride 1 mM
+0.4
-2.1
-0.1
-0.1
-0.1
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-1.8
-0.6
+0.0
+0.0
+0.4
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-1.2
-1.4
+0.4
-0.0
+0.3
stress
R2A with m-arsenite 0.0390625 mM
-0.7
-1.6
+0.1
+0.2
+0.1
r2a_control
R2A control
+0.2
-2.3
-0.0
-0.0
+0.3
stress
R2A with Zinc chloride 0.625 mM
-1.1
-1.1
+0.1
+0.1
+0.2
stress
R2A with nitrite 25 mM
-0.5
-1.5
+0.2
+0.3
-0.3
stress
R2A with bismuth(III) chloride 0.03125 mM
+0.8
-1.7
+0.1
-0.4
-0.1
stress
R2A with silver chloride 1 mM
+0.6
-1.7
+0.2
-0.1
-0.1
stress
R2A with Nickel (II) chloride 0.3125 mM
-0.8
-1.6
-0.0
-0.1
+1.3
stress
R2A with lithium chloride 15.625 mM
+0.5
-1.5
-0.1
-0.1
+0.3
stress
R2A with Gallium(III)chloride 0.78125 mM
+0.9
-0.9
+0.1
-0.3
-0.6
stress
R2A with Nickel (II) chloride 0.3125 mM
-0.1
-1.0
+0.2
+0.1
+2.4
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