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Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS02785 and LRK54_RS02790 overlap by 4 nucleotides
LRK54_RS02790 and LRK54_RS02795 overlap by 8 nucleotides
LRK54_RS02795 and LRK54_RS02800 overlap by 4 nucleotides
LRK54_RS02800 and LRK54_RS02805 are separated by 124 nucleotides
LRK54_RS02785: LRK54_RS02785 - PqiC family protein, at 596,176 to 596,835
_RS02785
LRK54_RS02790: LRK54_RS02790 - MlaD family protein, at 596,832 to 598,529
_RS02790
LRK54_RS02795: LRK54_RS02795 - paraquat-inducible protein A, at 598,522 to 599,175
_RS02795
LRK54_RS02800: LRK54_RS02800 - paraquat-inducible protein A, at 599,172 to 599,789
_RS02800
LRK54_RS02805: LRK54_RS02805 - thioredoxin, at 599,914 to 600,780
_RS02805
Group
Condition
LRK54
_RS02785
LRK54
_RS02790
LRK54
_RS02795
LRK54
_RS02800
LRK54
_RS02805
carbon source
a-Cyclodextrin 20 mM
-3.8
-3.9
-3.6
-3.7
+2.3
carbon source
a-Cyclodextrin 20 mM
-3.0
-3.0
-2.9
-2.8
+1.0
stress
R2A with Aluminum chloride 3.125 mM
-1.3
-1.3
-1.4
-1.4
-0.3
pH
R2A_PIPES pH 4
-1.3
-1.4
-1.5
-1.3
+0.1
pH
R2A_PIPES pH 4
-1.4
-1.2
-1.5
-1.4
+0.3
stress
R2A with Aluminum chloride 3.125 mM
-1.2
-1.1
-1.2
-1.1
+0.0
stress
R2A with Nickel (II) chloride 0.3125 mM
-0.6
-0.9
-0.8
-1.0
-0.4
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.2
+0.3
-0.4
+0.2
-3.7
phage
2B-T1
-0.2
-0.3
-0.1
-0.4
-2.4
phage
2F-T1
-0.3
-0.2
-0.3
-0.5
-2.0
stress
R2A with nitrite 25 mM
-0.6
-0.5
-0.5
-0.9
-0.8
stress
R2A_PIPES with Aluminum chloride 1.125 mM
-0.1
-0.3
-0.4
-0.1
-2.2
stress
R2A with Cesium chloride 3.90625 mM
-0.7
-0.7
-0.5
-1.1
-0.1
stress
R2A with SpecU metal mix 1 X
-0.7
-0.6
-0.7
-0.8
-0.3
stress
R2A with nitrite 50 mM
-0.7
-0.8
-0.7
-0.7
-0.0
stress
R2A with m-arsenite 0.078125 mM
-0.6
-0.4
-0.7
-0.7
-0.5
stress
R2A with Cesium chloride 3.90625 mM
-0.8
-0.8
-0.5
-1.0
+0.2
stress
R2A with Gallium(III)chloride 0.78125 mM
-0.3
-0.7
-0.5
-0.7
-0.7
stress
R2A with Cobalt chloride 0.15625 mM
-0.3
-0.3
-0.1
-0.3
-1.9
anaerobic
Anaerobic, acetate donor; nitrate and iron electron acceptors
-0.5
-0.4
-0.8
-0.6
-0.5
stress
R2A with bismuth(III) chloride 0.03125 mM
-0.5
-0.7
-0.3
-1.3
+0.0
stress
R2A with nitrite 25 mM
-0.7
-0.8
-0.6
-0.8
+0.3
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
-0.8
-0.8
-0.5
-0.8
+0.5
stress
R2A with Nickel (II) chloride 0.3125 mM
-0.7
-0.5
-0.5
-0.8
+0.4
stress
R2A with Calcium chloride 250 mM
-0.4
-0.6
-0.6
-0.8
+0.5
stress
R2A with Zinc chloride 0.625 mM
-0.6
-0.5
-0.6
-0.6
+0.6
phage
4B-T2
-0.2
-0.4
+0.4
-0.3
+1.7
carbon source
D-Glucose-6-Phosphate 20 mM
+0.1
+0.4
+0.6
+0.3
+1.4
carbon source
Gly-Glu 20 mM
+1.3
+1.2
+1.3
+1.2
-0.5
carbon source
Gly-Glu 20 mM
+1.6
+1.7
+1.5
+1.6
+0.0
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