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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS02620 and LRK54_RS02625 are separated by 171 nucleotides
LRK54_RS02625 and LRK54_RS02630 are separated by 54 nucleotides
LRK54_RS02630 and LRK54_RS02635 are separated by 105 nucleotides
LRK54_RS02635 and LRK54_RS02640 are separated by 169 nucleotides
LRK54_RS02620: LRK54_RS02620 - NlpC/P60 family protein, at 562,819 to 563,364
_RS02620
LRK54_RS02625: LRK54_RS02625 - peptidylprolyl isomerase, at 563,536 to 564,021
_RS02625
LRK54_RS02630: LRK54_RS02630 - MFS transporter, at 564,076 to 565,308
_RS02630
LRK54_RS02635: LRK54_RS02635 - class I SAM-dependent methyltransferase, at 565,414 to 566,070
_RS02635
LRK54_RS02640: LRK54_RS02640 - DEAD/DEAH box helicase, at 566,240 to 567,568
_RS02640
Group
Condition
LRK54
_RS02620
LRK54
_RS02625
LRK54
_RS02630
LRK54
_RS02635
LRK54
_RS02640
stress
R2A with Calcium chloride 250 mM
-0.2
-0.8
-0.0
-0.0
-1.8
stress
R2A with Cesium chloride 3.90625 mM
-0.3
-0.8
-0.1
-0.3
-0.6
stress
R2A with Ferric chloride 1.5625 mM
-0.2
-0.7
+0.0
-0.2
-0.7
stress
R2A with silver chloride 1 mM
-0.2
-1.2
-0.1
-0.2
-0.1
stress
R2A with Calcium chloride 125 mM
+0.0
-0.3
-0.0
+0.1
-1.5
stress
R2A with bismuth(III) chloride 0.03125 mM
+0.2
-1.6
+0.2
+0.2
-0.6
phage
3E-T1
-0.1
-0.5
-0.2
-0.1
-0.5
stress
R2A with Cesium chloride 3.90625 mM
-0.2
-0.5
+0.0
-0.1
-0.4
stress
R2A with Strontium chloride 3.90625 mM
-0.1
-0.4
-0.1
+0.0
-0.6
phage
1B-T1
-0.2
-0.2
-0.1
-0.1
-0.7
stress
R2A with Aluminum chloride 3.125 mM
+0.2
-0.6
-0.0
-0.0
-0.8
phage
1D-T2
-0.3
-0.4
-0.1
-0.4
-0.0
stress
R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
-0.2
-0.3
-0.0
-0.0
-0.6
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
-0.0
-0.1
-0.0
-0.3
-0.8
stress
R2A with Calcium chloride 125 mM
+0.1
-0.4
+0.1
+0.0
-0.9
phage
3B-T1
-0.3
-0.3
-0.1
-0.2
-0.2
stress
R2A with silver chloride 1 mM
-0.0
-0.8
+0.0
-0.1
-0.2
phage
2A-T1
-0.3
+0.0
-0.3
-0.1
-0.5
phage
S3-T1
+0.1
-0.2
-0.2
-0.1
-0.5
stress
R2A with sulfate 250 mM
-0.2
-0.7
+0.1
+0.1
-0.3
stress
R2A with Calcium chloride 250 mM
+0.0
-0.3
+0.0
+0.2
-0.9
stress
R2A with Chloride 250 mM
-0.3
-0.4
-0.0
+0.1
-0.3
phage
2F-T1
-0.4
+0.3
-0.3
-0.1
-0.4
carbon source
a-Cyclodextrin 20 mM
+0.0
-0.2
+0.1
+0.4
-0.5
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.3
+0.3
-0.2
+0.2
-0.1
carbon source
acetate 20 mM
+0.2
-0.4
+0.0
-0.2
+0.4
pH
R2A_PIPES pH 4
+0.2
-0.5
+0.0
-0.1
+0.4
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
+0.4
-0.3
-0.2
-0.8
+0.8
phage
1E-T1
-0.1
-0.1
-0.1
-0.2
+0.7
pH
R2A_PIPES pH 4
+0.2
-0.5
+0.1
+0.0
+0.4
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