Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS02195 and LRK54_RS02200 are separated by 76 nucleotidesLRK54_RS02200 and LRK54_RS02205 are separated by 82 nucleotidesLRK54_RS02205 and LRK54_RS02210 overlap by 4 nucleotidesLRK54_RS02210 and LRK54_RS02215 overlap by 4 nucleotides LRK54_RS02195: LRK54_RS02195 - pilus assembly protein PilY, at 476,487 to 480,245 _RS02195 LRK54_RS02200: LRK54_RS02200 - PilX N-terminal domain-containing pilus assembly protein, at 480,322 to 480,849 _RS02200 LRK54_RS02205: LRK54_RS02205 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 480,932 to 481,984 _RS02205 LRK54_RS02210: LRK54_RS02210 - type IV pilus modification protein PilV, at 481,981 to 482,508 _RS02210 LRK54_RS02215: LRK54_RS02215 - GspH/FimT family pseudopilin, at 482,505 to 483,137 _RS02215
Group Condition LRK54_RS02195 LRK54_RS02200 LRK54_RS02205 LRK54_RS02210 LRK54_RS02215
stress R2A with ammonium iron(II) sulfate 2.5 mM +0.7 +0.7 +0.7 +1.0 +0.9
stress R2A with lead(II) chloride 0.625 mM +0.7 +0.7 +0.8 +0.9 +0.9
stress R2A with Cesium chloride 3.90625 mM +0.6 +0.7 +0.7 +1.1 +1.0
stress R2A with silver chloride 1 mM +0.7 +0.7 +0.7 +1.0 +1.1
carbon source D-Glucose (C); 30C +0.7 +0.7 +0.7 +1.0 +1.1
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM +0.9 +0.9 +0.9 +0.7 +0.9
stress R2A with beryllium sulfate tetrahydrate 1.953125 mM +0.6 +0.7 +0.8 +1.1 +1.0
stress R2A with beryllium sulfate tetrahydrate 1.953125 mM +0.7 +0.7 +0.7 +0.9 +1.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +1.0 +1.0 +1.0 +1.0 +1.0
carbon source casaminos 2 mg/mL +0.9 +0.9 +1.0 +1.1 +1.0
pH R2A_PIPES pH 4 +1.0 +1.0 +1.0 +1.0 +1.0
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM +1.0 +1.0 +1.0 +1.2 +0.9
carbon source casaminos 2 mg/mL +1.0 +0.9 +1.1 +0.9 +1.1
stress R2A with Uranyl acetate 2.5 mM +0.9 +1.0 +1.0 +1.2 +1.1
pH R2A_PIPES pH 4 +1.0 +1.0 +1.1 +1.0 +1.2
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +1.1 +1.1 +1.2 +1.1 +0.9
carbon source D-Glucose 20 mM +1.0 +1.0 +1.2 +1.1 +1.1
carbon source D-Maltose 20 mM +1.0 +1.0 +1.2 +1.0 +1.3
anaerobic Anaerobic, acetate donor; nitrate electron acceptor +0.9 +1.2 +1.2 +1.1 +1.3
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM +1.2 +1.1 +1.1 +1.2 +1.1
carbon source Gly-Glu 20 mM +1.1 +1.1 +1.3 +1.2 +1.4
stress R2A with Aluminum chloride 3.125 mM +1.3 +1.2 +1.3 +1.3 +1.2
carbon source Gly-Glu 20 mM +1.3 +1.3 +1.3 +1.3 +1.2
stress R2A with Ferric chloride 1.5625 mM +1.2 +1.2 +1.4 +1.4 +1.4
carbon source acetate 20 mM +1.4 +1.4 +1.5 +1.5 +1.5
carbon source D-Trehalose 20 mM +1.4 +1.4 +1.5 +1.5 +1.5
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors +1.5 +1.5 +1.7 +1.8 +1.7
stress R2A with ammonium iron(II) sulfate 2.5 mM +1.5 +1.6 +1.6 +1.9 +1.9
carbon source acetate 20 mM +1.7 +1.6 +1.8 +1.7 +1.8
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors +1.7 +1.9 +2.0 +2.2 +2.0
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