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Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS02195 and LRK54_RS02200 are separated by 76 nucleotides
LRK54_RS02200 and LRK54_RS02205 are separated by 82 nucleotides
LRK54_RS02205 and LRK54_RS02210 overlap by 4 nucleotides
LRK54_RS02210 and LRK54_RS02215 overlap by 4 nucleotides
LRK54_RS02195: LRK54_RS02195 - pilus assembly protein PilY, at 476,487 to 480,245
_RS02195
LRK54_RS02200: LRK54_RS02200 - PilX N-terminal domain-containing pilus assembly protein, at 480,322 to 480,849
_RS02200
LRK54_RS02205: LRK54_RS02205 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 480,932 to 481,984
_RS02205
LRK54_RS02210: LRK54_RS02210 - type IV pilus modification protein PilV, at 481,981 to 482,508
_RS02210
LRK54_RS02215: LRK54_RS02215 - GspH/FimT family pseudopilin, at 482,505 to 483,137
_RS02215
Group
Condition
LRK54
_RS02195
LRK54
_RS02200
LRK54
_RS02205
LRK54
_RS02210
LRK54
_RS02215
stress
R2A with ammonium iron(II) sulfate 2.5 mM
+0.7
+0.7
+0.7
+1.0
+0.9
stress
R2A with lead(II) chloride 0.625 mM
+0.7
+0.7
+0.8
+0.9
+0.9
stress
R2A with Cesium chloride 3.90625 mM
+0.6
+0.7
+0.7
+1.1
+1.0
stress
R2A with silver chloride 1 mM
+0.7
+0.7
+0.7
+1.0
+1.1
carbon source
D-Glucose (C); 30C
+0.7
+0.7
+0.7
+1.0
+1.1
biofilm assay; biofilm sample
biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
+0.9
+0.9
+0.9
+0.7
+0.9
stress
R2A with beryllium sulfate tetrahydrate 1.953125 mM
+0.6
+0.7
+0.8
+1.1
+1.0
stress
R2A with beryllium sulfate tetrahydrate 1.953125 mM
+0.7
+0.7
+0.7
+0.9
+1.1
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
+1.0
+1.0
+1.0
+1.0
+1.0
carbon source
casaminos 2 mg/mL
+0.9
+0.9
+1.0
+1.1
+1.0
pH
R2A_PIPES pH 4
+1.0
+1.0
+1.0
+1.0
+1.0
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
+1.0
+1.0
+1.0
+1.2
+0.9
carbon source
casaminos 2 mg/mL
+1.0
+0.9
+1.1
+0.9
+1.1
stress
R2A with Uranyl acetate 2.5 mM
+0.9
+1.0
+1.0
+1.2
+1.1
pH
R2A_PIPES pH 4
+1.0
+1.0
+1.1
+1.0
+1.2
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
+1.1
+1.1
+1.2
+1.1
+0.9
carbon source
D-Glucose 20 mM
+1.0
+1.0
+1.2
+1.1
+1.1
carbon source
D-Maltose 20 mM
+1.0
+1.0
+1.2
+1.0
+1.3
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
+0.9
+1.2
+1.2
+1.1
+1.3
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
+1.2
+1.1
+1.1
+1.2
+1.1
carbon source
Gly-Glu 20 mM
+1.1
+1.1
+1.3
+1.2
+1.4
stress
R2A with Aluminum chloride 3.125 mM
+1.3
+1.2
+1.3
+1.3
+1.2
carbon source
Gly-Glu 20 mM
+1.3
+1.3
+1.3
+1.3
+1.2
stress
R2A with Ferric chloride 1.5625 mM
+1.2
+1.2
+1.4
+1.4
+1.4
carbon source
acetate 20 mM
+1.4
+1.4
+1.5
+1.5
+1.5
carbon source
D-Trehalose 20 mM
+1.4
+1.4
+1.5
+1.5
+1.5
anaerobic
Anaerobic, acetate donor; nitrate and iron electron acceptors
+1.5
+1.5
+1.7
+1.8
+1.7
stress
R2A with ammonium iron(II) sulfate 2.5 mM
+1.5
+1.6
+1.6
+1.9
+1.9
carbon source
acetate 20 mM
+1.7
+1.6
+1.8
+1.7
+1.8
anaerobic
Anaerobic, acetate donor; nitrate and iron electron acceptors
+1.7
+1.9
+2.0
+2.2
+2.0
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