Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS02010 and LRK54_RS02015 are separated by 165 nucleotidesLRK54_RS02015 and LRK54_RS02020 are separated by 53 nucleotidesLRK54_RS02020 and LRK54_RS02025 are separated by 4 nucleotidesLRK54_RS02025 and LRK54_RS02030 overlap by 4 nucleotides LRK54_RS02010: LRK54_RS02010 - Slp family lipoprotein, at 423,927 to 424,442 _RS02010 LRK54_RS02015: LRK54_RS02015 - cation diffusion facilitator family transporter, at 424,608 to 425,510 _RS02015 LRK54_RS02020: LRK54_RS02020 - DUF2058 domain-containing protein, at 425,564 to 426,103 _RS02020 LRK54_RS02025: LRK54_RS02025 - VOC family protein, at 426,108 to 426,500 _RS02025 LRK54_RS02030: LRK54_RS02030 - MmcQ/YjbR family DNA-binding protein, at 426,497 to 426,895 _RS02030
Group Condition LRK54_RS02010 LRK54_RS02015 LRK54_RS02020 LRK54_RS02025 LRK54_RS02030
stress R2A with chromate 0.0048828125 mM -0.0 -0.4 -1.0 -1.0 +0.1
phage 1D-T2 -0.2 +0.1 -0.3 -0.7 -0.3
phage 1A-T1 -0.5 +0.3 -1.5 +0.2 +0.2
stress R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM +0.3 -0.0 -1.2 -0.2 -0.2
stress R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM +0.1 -0.2 -1.2 +0.3 -0.3
r2a_control R2A control -0.3 -0.1 -1.2 +0.3 -0.0
stress R2A with Other_metal_mix 1 X +0.0 -0.2 -1.0 +0.3 -0.4
biofilm assay; planktonic sample Planktonic; Day4; SGW; pH7 -1.0 +0.1 +0.1 +0.3 -0.4
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.2 -0.2 +0.8 -0.7 -0.3
phage 1A-T2 -0.0 -0.1 -1.0 +0.3 +0.3
phage 3E-T2 +0.2 +0.3 -0.7 -0.3 -0.2
biofilm assay; biofilm sample biofilm; Day2; NLDM; +0.1 -0.2 -0.6 +0.6 -0.4
carbon source D-Glucose-6-Phosphate 20 mM -0.4 -0.4 +0.7 -0.4 -0.1
pH R2A_PIPES pH 4.25 -0.7 -0.4 +0.1 +0.3 +0.2
stress R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM +0.4 +0.1 -0.9 +0.8 -0.9
biofilm assay; biofilm sample biofilm; Day2; NLDM; -0.2 +0.0 -0.9 +0.3 +0.3
stress R2A with arsenate 31.25 mM -0.8 -0.2 +0.7 +0.1 -0.1
stress R2A_PIPES with Metal_ion_mix_sitestressplate 2 x -0.4 -0.2 +0.8 -0.1 -0.3
stress R2A with bismuth(III) chloride 0.03125 mM -0.4 -0.2 +1.8 -0.7 -0.4
stress R2A with nitrate 250 mM -0.6 -0.2 +0.6 +0.4 -0.2
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.2 -0.4 +0.5 -0.5 +0.3
pH R2A_PIPES pH 4.25 -0.5 -0.4 +0.8 +0.2 +0.1
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM -0.3 -0.4 +0.3 +0.4 +0.4
no stress control no stress control -0.5 +0.2 +0.4 +0.2 +0.3
stress R2A with copper (II) chloride 0.3125 mM -0.1 -0.1 +1.0 +0.4 -0.1
phage 1C-T2 +0.4 +0.1 +0.9 -0.4 +0.1
phage 2A-T2 -0.2 +0.2 +0.9 +0.5 +0.1
carbon source a-Cyclodextrin 20 mM -0.1 +0.0 +1.1 -0.1 +0.5
biofilm assay; planktonic sample planktonic; Day1; NLDM; -0.1 -0.0 +0.8 +0.2 +0.7
stress R2A with Cobalt chloride 0.15625 mM +0.4 +0.3 +0.1 -0.1 +0.8
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