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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS01975 and LRK54_RS01980 are separated by 14 nucleotides
LRK54_RS01980 and LRK54_RS01985 are separated by 9 nucleotides
LRK54_RS01985 and LRK54_RS01990 overlap by 4 nucleotides
LRK54_RS01990 and LRK54_RS01995 are separated by 102 nucleotides
LRK54_RS01975: LRK54_RS01975 - DUF411 domain-containing protein, at 417,444 to 417,896
_RS01975
LRK54_RS01980: LRK54_RS01980 - c-type cytochrome, at 417,911 to 418,984
_RS01980
LRK54_RS01985: LRK54_RS01985 - copper resistance protein B, at 418,994 to 420,127
_RS01985
LRK54_RS01990: LRK54_RS01990 - copper resistance system multicopper oxidase, at 420,124 to 421,875
_RS01990
LRK54_RS01995: LRK54_RS01995 - hypothetical protein, at 421,978 to 422,343
_RS01995
Group
Condition
LRK54
_RS01975
LRK54
_RS01980
LRK54
_RS01985
LRK54
_RS01990
LRK54
_RS01995
stress
R2A with chromate 0.0048828125 mM
-0.2
-0.3
-0.5
-0.2
-2.9
stress
R2A with copper (II) chloride 0.3125 mM
+0.0
-0.1
-0.8
-2.2
+0.1
stress
R2A with chromate 0.0048828125 mM
-0.4
-0.7
-0.0
-0.1
-1.2
stress
R2A with copper (II) chloride 0.3125 mM
+0.1
+0.1
-0.8
-2.2
+0.5
stress
R2A with Nickel (II) chloride 0.3125 mM
-0.2
+0.3
-0.2
-0.0
-1.9
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Aluminum chloride 1mM
-0.3
+0.3
+0.2
-0.1
-1.9
stress
R2A with Selective_ion_mix_1 1 X
+0.3
-0.1
+0.1
-0.1
-1.8
phage
phage 31.1
-0.0
+0.7
+0.1
-0.1
-2.3
stress
R2A with Cobalt chloride 0.15625 mM
-0.0
+0.0
-0.2
-0.0
-1.2
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
+0.1
-0.1
+0.4
+0.0
-1.9
stress
R2A with Zinc chloride 0.625 mM
+0.2
-1.0
-0.4
-0.2
+0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.4
+0.3
+0.3
-0.1
-1.1
stress
R2A with nitrate 125 mM
+0.1
-0.3
+0.0
+0.1
-0.9
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
-0.1
+0.1
+0.2
+0.0
-1.2
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
-0.5
-0.6
+0.1
+0.1
+0.3
phage
S5-T2
+0.5
-0.5
+0.2
+0.2
-1.0
phage
1C-T2
+0.4
+0.4
-0.1
+0.2
-1.5
phage
1E-T1
+0.5
-0.3
+0.4
+0.1
-0.7
phage
2B-T1
+0.4
-0.4
+0.2
+0.2
-0.3
stress
R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
-0.2
-0.1
-0.2
-0.1
+0.8
stress
R2A_PIPES with Nickel (II) chloride 424 uM
-0.4
+0.5
+0.1
-0.2
+0.3
carbon source
a-Cyclodextrin 20 mM
+0.8
+0.4
+0.4
+0.1
-1.3
biofilm assay; biofilm sample
biofilm; Day2; NLDM;
-0.7
+0.4
+0.3
+0.2
+0.4
phage
4E-T1
+0.2
-0.5
+0.2
+0.2
+0.7
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-0.4
-0.1
+0.1
-0.0
+1.3
stress
R2A with Cadmium chloride hemipentahydrate 0.0390625 mM
+0.3
+0.4
+0.3
+0.3
-0.2
biofilm assay; planktonic sample
Planktonic; Day2; SGW; pH7
+0.1
+0.3
+0.1
+0.1
+1.1
stress
R2A with bismuth(III) chloride 0.03125 mM
+0.3
+0.2
+0.6
+0.2
+0.9
stress
R2A with silver chloride 1 mM
+0.8
+1.1
+0.7
+0.5
+1.0
stress
R2A with silver chloride 1 mM
+0.9
+1.2
+0.7
+0.6
+1.4
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