Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS01515 and LRK54_RS01520 are separated by 163 nucleotidesLRK54_RS01520 and LRK54_RS01525 are separated by 74 nucleotidesLRK54_RS01525 and LRK54_RS01530 are separated by 368 nucleotidesLRK54_RS01530 and LRK54_RS01535 are separated by 95 nucleotides LRK54_RS01515: LRK54_RS01515 - NUDIX hydrolase, at 328,969 to 329,520 _RS01515 LRK54_RS01520: LRK54_RS01520 - amino acid permease, at 329,684 to 331,168 _RS01520 LRK54_RS01525: LRK54_RS01525 - amino acid permease, at 331,243 to 332,727 _RS01525 LRK54_RS01530: LRK54_RS01530 - IS4 family transposase, at 333,096 to 334,436 _RS01530 LRK54_RS01535: LRK54_RS01535 - high-potential iron-sulfur protein, at 334,532 to 334,864 _RS01535
Group Condition LRK54_RS01515 LRK54_RS01520 LRK54_RS01525 LRK54_RS01530 LRK54_RS01535
carbon source Gly-Glu 20 mM +0.2 -2.5 -1.2 N.D. -0.1
carbon source Gly-Glu 20 mM +0.6 -2.5 -1.0 N.D. -0.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; +0.1 -2.2 -0.3 N.D. -0.1
carbon source D-Glucosamine Hydrochloride 20 mM +0.2 -2.4 -0.0 N.D. +0.0
carbon source NAG 20 mM +0.4 -2.2 -0.2 N.D. -0.3
carbon source D-Glucose-6-Phosphate 20 mM +0.5 -2.1 -0.8 N.D. +0.3
biofilm assay; planktonic sample planktonic; Day2; NLDM; +0.4 -2.2 -0.3 N.D. -0.0
carbon source D-Glucose-6-Phosphate 20 mM +0.3 -1.9 -0.5 N.D. +0.0
carbon source D-Glucosamine Hydrochloride 20 mM +0.3 -2.4 -0.1 N.D. +0.1
carbon source NAG 20 mM +0.5 -2.2 -0.1 N.D. -0.2
carbon source D-Maltose 20 mM +0.4 -2.0 -0.2 N.D. -0.2
biofilm assay; planktonic sample planktonic; Day2; NLDM; +0.6 -1.8 -0.3 N.D. -0.4
carbon source pyruvate 20 mM +0.4 -1.9 -0.2 N.D. -0.3
biofilm assay; planktonic sample planktonic; Day1; NLDM; +0.6 -2.3 -0.4 N.D. +0.1
carbon source L-Glutamic 20 mM +0.9 -2.9 +0.1 N.D. -0.0
biofilm assay; planktonic sample planktonic; Day1; NLDM; +0.6 -2.1 -0.3 N.D. -0.1
carbon source L-Glutamic 20 mM +0.7 -2.7 +0.1 N.D. +0.0
biofilm assay; planktonic sample planktonic; Day2; NLDM; +0.5 -1.8 -0.2 N.D. -0.2
carbon source pyruvate 20 mM +0.5 -1.8 -0.3 N.D. -0.1
carbon source D-Trehalose 20 mM +0.5 -2.0 -0.2 N.D. +0.1
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM +0.6 -1.8 +0.0 N.D. -0.3
carbon source a-Cyclodextrin 20 mM +0.6 -1.5 -0.1 N.D. -0.4
biofilm assay; planktonic sample planktonic; Day1; NLDM; +0.6 -1.7 -0.4 N.D. +0.1
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors +0.9 -2.1 -0.3 N.D. +0.3
anaerobic Anaerobic, acetate donor; nitrate electron acceptor +1.3 -1.8 -0.2 N.D. -0.1
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors +0.7 -1.7 +0.0 N.D. +0.2
stress R2A with bismuth(III) chloride 0.03125 mM +0.3 -1.3 -0.3 N.D. +0.9
anaerobic Anaerobic, acetate donor; nitrate electron acceptor +1.6 -1.4 -0.5 N.D. +0.6
stress R2A with Aluminum chloride 3.125 mM -0.3 +1.9 +1.3 N.D. +0.1
stress R2A with Manganese (II) chloride tetrahydrate 2.5 mM +0.2 +2.6 +0.4 N.D. -0.0
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